| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_4151 |
|---|
| Symbol | |
|---|
| ID | 5199552 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 4565168 |
|---|
| End bp | 4567462 |
|---|
| Gene Length | 2295 bp |
|---|
| Protein Length | 764 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 640583705 |
|---|
| Product | TonB-dependent receptor |
|---|
| Protein accession | YP_001264629 |
|---|
| Protein GI | 148557047 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.394779 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.367736 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGACGG TAGCAACCGC GCGGGGCGTG CTCCTTGCCT CGCTGGCTAC GATCGCGATC
GGCGGCCGGG CGATGGCGCA GACGGCGGAG GCGCCCGCGG CCGCCCCGCC CCAGGAGGCA
GCATCCGACG ATGGCGGCCT GGGCGAGATC ATCGTCACCG CGCAGAAGCG ATCGGAGAAT
CTCCAGCGCG TGCCGGTGTC GGTCAGCGCG CTGTCCTCGG CGCAGCTCGA CCAGCAGAAA
ATCCGCAACG TCACCTCGAT CGTGTCGCAG ATTCCCAGCC TGCAGGTGAC CGGTCCGTTC
AGCGACGGCC TGCCGGTCTT CTCGATCCGC GGCATCTCCT CGCTCGATTT CGGTCATAAC
CAGTCGAGCC CGGTCGCGCT CTATGTGGAC GAGGTCTATA AGGGCCTGCC GGTCCTGTCG
TCGCTCCAGA TATTCGATCT CGACCGGGTC GAGGTGCTGC GCGGGCCGCA GGGCACGCTG
TTCGGGAAGA ACACCACCGG CGGCGCGGTC AACATCTTCA CCAAGCAGCC CGATCTCGGG
GATGGCTGGA CCGGCTATCT GTCGGGCGGC ATCGGCAACC TCGCGCGGCG CGAGGTTAAC
GGCGGCGCCA ATGTGCCGCT GGTGGAGGAC AAGCTCGCCG GCCGGGTCGC CTTCTCCTAC
ACCAATGTCG ACGGCTTCGT GCGCAACCGG CTGCCCGGCA AGAAGGACCA GGGTTCGATC
GACGATTTCG CCCTGCGCGC CAGCCTGCTC TACAAGCCCA GCGACGGGCT GCGCTTCCTG
TTGCGCGGCA CGCGGACCCG ATCGACCCCC GACAATGCCT ATGGCGGCCT CGCCAAGGAC
ATCGGCGTGG CGGGGCCCGG CGGCGTCGGC TTCGGCACCG GCTATACCCG CGCCGGCCTC
GGCTTCTTCG AGAATGAATC GGATCGGGAC GGGGTCATCA ACATCCACAA CCAGGGTGTT
TCGCTGACCA CCAACTGGGA CCTGAGCGAC AGCGTCGCGC TCACCGCGGT GTCGGCCTAT
GACGAAGGCC GCTGGTTCTC GCAGGAGGAC TCGGACGCGA CGCCGTTTCG CATCCAGGAA
GCGGATTTCT ACAGCAGGGC CAAGGCCTAT TCGCAGGACC TGCGCCTCGC CTCGACCAGT
GACGGGCCGC TGCAATGGAT GGTCGGCGCC TATTATTATC GCGACAAGGT CGATTTCCGG
ACGACCTACA AATTCTACTA TGAATATGCG GGCGACGCTG ACGGCAACGG CCAGCTCGAC
TGTTTCGACG ACGGGCTGAC CGGCTGCGGC TACGACAATG CCCTGCGCCA GGTCCGCACC
AGCCTCGCCC TCTACACGCA GAACAGCTAC AAGCTGGACT CCGGGCTCAG CTTTACCCTC
GGCCTGCGCT ACACCCATGA CAACAACCGG CTGAAATCCT ATCGCAGCAC GCTGCGCTAT
CTCGATCCGG CGACCGGGCA GGAGGTGCTC AACGCCGCGG TGATCTTCGA CCGGCCGCCC
GTCGACAAGC TCAAGTCGGA GAATCTGAGC TGGAAGCTCG GCGTCTCGCA GGAGTTTGCC
GGCGGCGCGC TCGCCTATGC CAATTACAGC CGCGGCTGGC GCGGCGGCGC GTTCAACGGC
CAGGCCTTCT TCGCCGCGCA GGAGGTGACG GCGGTCGGGC CCGAGCGGCT CGACTCCTGG
GAGGTCGGCC TGAAATATCA GACGCCCGAC CGGCGCCTGC GCATCAACAC CGCCGCCTTC
TACTATATCT ACCGCGACCA GCAGTTCATC GACGTCACGC CGAACTTCCT CCAGCTCCTG
ACCAGCGCGC CCAGGTCGCG GCTCTGGGGT GTCGAAGCCG ACATCGTGGC GCAGCCGCTC
GATCCGCTGA CCGTCCGCTT CAGCGTCGCC TATCTCAACG CCAAGTTCCG GGAGGTGACC
GTCAGCGGCG TCGACCTTTC GGGCAAGCGG CTGATCCTGG CGCCGGAATG GACGCTGAGC
GGCGGCATCG ACTGGCGCGT GGCCGAAGGC GATTTCGGCG GCCTGTTGCT GCATACCGAC
TCCCGCTTCA CCTCGCGCGT CTATTACAGC GCCTTCAACC TCCCGCTGAT CAGCCAGAAG
GCCAATTCGC TTCACGATGC GCGGTTGACC TGGCAGCTCC CGGGCAAGCG CCTCTCGTTG
TCGGCCTGGA TGAAGAACAT CTTCAACGAG AAGACGCTGA ACTTCGTCGC CGATCTGGGC
GCCGGCTATA ATTACAACTT CGCCCAGCGC GGCCGGCCCC GCGAATATGG CATCGAGGCA
CGCTTCGAAT TCTGA
|
|---|
| Protein sequence | MMTVATARGV LLASLATIAI GGRAMAQTAE APAAAPPQEA ASDDGGLGEI IVTAQKRSEN
LQRVPVSVSA LSSAQLDQQK IRNVTSIVSQ IPSLQVTGPF SDGLPVFSIR GISSLDFGHN
QSSPVALYVD EVYKGLPVLS SLQIFDLDRV EVLRGPQGTL FGKNTTGGAV NIFTKQPDLG
DGWTGYLSGG IGNLARREVN GGANVPLVED KLAGRVAFSY TNVDGFVRNR LPGKKDQGSI
DDFALRASLL YKPSDGLRFL LRGTRTRSTP DNAYGGLAKD IGVAGPGGVG FGTGYTRAGL
GFFENESDRD GVINIHNQGV SLTTNWDLSD SVALTAVSAY DEGRWFSQED SDATPFRIQE
ADFYSRAKAY SQDLRLASTS DGPLQWMVGA YYYRDKVDFR TTYKFYYEYA GDADGNGQLD
CFDDGLTGCG YDNALRQVRT SLALYTQNSY KLDSGLSFTL GLRYTHDNNR LKSYRSTLRY
LDPATGQEVL NAAVIFDRPP VDKLKSENLS WKLGVSQEFA GGALAYANYS RGWRGGAFNG
QAFFAAQEVT AVGPERLDSW EVGLKYQTPD RRLRINTAAF YYIYRDQQFI DVTPNFLQLL
TSAPRSRLWG VEADIVAQPL DPLTVRFSVA YLNAKFREVT VSGVDLSGKR LILAPEWTLS
GGIDWRVAEG DFGGLLLHTD SRFTSRVYYS AFNLPLISQK ANSLHDARLT WQLPGKRLSL
SAWMKNIFNE KTLNFVADLG AGYNYNFAQR GRPREYGIEA RFEF
|
|---|
| |