| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3509 |
|---|
| Symbol | |
|---|
| ID | 5197767 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 3865041 |
|---|
| End bp | 3865736 |
|---|
| Gene Length | 696 bp |
|---|
| Protein Length | 231 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 640583064 |
|---|
| Product | tetratricopeptide TPR_4 |
|---|
| Protein accession | YP_001263993 |
|---|
| Protein GI | 148556411 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 0.697932 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.144204 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCATCC GGCCCCTGAT CCTGTTCCTG CTCGCGGTCG CGCCCCCCGT CGTCGCGCCC
TCCGCCGCAC GCGCCGCGCC GCCGGCCAAG TCGTCCGCGC CGCAGACGCG CGGCCTCTAT
CTCCAGCTGA TCGGCCAGGC GCGCAGCGAC GGCCGGCCGC GCGCGGCGCT CGCCTATCTC
GACGATTTCG ACAAGCGCTT TCCCGGCGAC GTCGGCGCGC AGGTGCTGCG GGTGAACAGC
CTGCTCGACC TGGGCCAGGT GGACGAGGCC GAGCGGATCG TGGCGGCCCT CGCCAAGGTC
CAGGGCAATG CCACGGTCGA CGCGGTGCGC GGCCATGCGC TGGCGGCGCG CGGCCATTGG
CGCGAGGCGA GCGAGCGTTA CCAGGCCGCG GTGGCGGCCA GCCCCGCCGA TCCGCTGCTG
CGCAACGCGC TCGGCTATGC CCAGCTCCGC GCCGGCGAAG GCGACAGCGC GATCGAGGAG
CTGCGCGGCG CCTGCGACCT CGCCCCCGGC GAGACGGTGA TCCGCAACAA CCTGCTGCTC
GCCTATGCCG TCACCGGCCG CAAGCAGGAG CTGTCCGCCG GCATCCGCAC GACCGGCAAC
CGCAAGGCGC AGGCCGAATT GCTGCGCACC ATCACCACCG AGGCGAAGCG CATCGCCCGC
GAGCCGGCCC TGCCGGGAAA GGAAAACGGA CGATGA
|
|---|
| Protein sequence | MTIRPLILFL LAVAPPVVAP SAARAAPPAK SSAPQTRGLY LQLIGQARSD GRPRAALAYL
DDFDKRFPGD VGAQVLRVNS LLDLGQVDEA ERIVAALAKV QGNATVDAVR GHALAARGHW
REASERYQAA VAASPADPLL RNALGYAQLR AGEGDSAIEE LRGACDLAPG ETVIRNNLLL
AYAVTGRKQE LSAGIRTTGN RKAQAELLRT ITTEAKRIAR EPALPGKENG R
|
|---|
| |