| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3389 |
|---|
| Symbol | |
|---|
| ID | 5197116 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 3716572 |
|---|
| End bp | 3717306 |
|---|
| Gene Length | 735 bp |
|---|
| Protein Length | 244 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 640582936 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001263873 |
|---|
| Protein GI | 148556291 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00880] Multidrug resistance protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 37 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0402028 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCAACA CACGCCCCCA GTGGGCCTAT ACTCTGCCGG CAGCGCTGCT GCTGATGGCA
CCCTTCGACA TTCTCGCCTC ACTGGCGATG GATATTTATC TTCCCGTCGT CCCTTCGATG
CCTGGCATCC TGAATACGAC GCCATCTGTT ATCCAACTCA CGTTGAGCCT CTATATGGTG
ATGCTCGGTG TGGGCCAGGT GGTCTTTGGC CCGATCTCGG ATCGAATAGG GCGGCGACCA
GTCCTGCTTA CAGGCGCAGC GCTGTTCACC CTTGCATCTC TTGCAGCAGG ATGGTCGTCG
ACCGCCCCTG CCTTTGTTGG CTTTCGTCTG CTTCAAGCAA TTGGCGCGTC AGCCGCAATG
GTTGCAACAT TCGCGACGGT GCGTGATGTT TACGGCAATC GCCCGGAAGG TGTCGTGATA
TACGGCCTTT TCAGTTCTAT GCTGGCCTTC GTGCCCGCCC TTGGGCCTAT TGCCGGAGCA
TTGATTGGGA CGTCCTTGGG CTGGCAGGCG ATATTCATCA CCTTAGCCGG ATTGGCATTT
CTAGCGCTTC TGAACGCTAT GTTCAGGTGG CACGAAACTC AGCCTGAAGA TCAGGCAAAG
ATGCGTCGAC CCGTGTGGCC GATTTTCGTA AGCCCCGCCT TTTGGGTTTA TACCCTCGGC
TTTAGCGCGG CTATGGGCAC ATTCTTTACC TTCTTTGTGG ATCGGCGTGC AAAAAGGACC
CCGTTAGCGG GGTGA
|
|---|
| Protein sequence | MTNTRPQWAY TLPAALLLMA PFDILASLAM DIYLPVVPSM PGILNTTPSV IQLTLSLYMV
MLGVGQVVFG PISDRIGRRP VLLTGAALFT LASLAAGWSS TAPAFVGFRL LQAIGASAAM
VATFATVRDV YGNRPEGVVI YGLFSSMLAF VPALGPIAGA LIGTSLGWQA IFITLAGLAF
LALLNAMFRW HETQPEDQAK MRRPVWPIFV SPAFWVYTLG FSAAMGTFFT FFVDRRAKRT
PLAG
|
|---|
| |