| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_3200 |
|---|
| Symbol | |
|---|
| ID | 5198204 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 3516709 |
|---|
| End bp | 3517851 |
|---|
| Gene Length | 1143 bp |
|---|
| Protein Length | 380 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 640582746 |
|---|
| Product | lycopene cyclase |
|---|
| Protein accession | YP_001263685 |
|---|
| Protein GI | 148556103 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0644] Dehydrogenases (flavoproteins) |
|---|
| TIGRFAM ID | [TIGR01789] lycopene cyclase
[TIGR01790] lycopene cyclase family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 0.696424 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.730117 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGGCG TCATGTGCGA TCTCGCCATC ATCGGCGGCG GCCTTTCGGG CGGACTGATC
GCATTGGCCG CGCGCCGGGC GCGGCCCGAT CGCCGCGTCC TGCTGATCGA GGCGGCGCCG
ACGCTGGGCG GCGCGCACCT CTGGTCCTTC CTCGACAGCG ACGTGGAAGC GGAGGACCGG
CCGCTGCTCG AACCGCTGGT CAACTATGGC TGGCGCGAGT TCGCGGTGGT CTTCCCGCTC
TACAAGCGGG CGCTGCCCTT CCCCTTCTAC AGCATCCGTT CCGACCGGTT CGACGCGGCG
CTGCGCGAGG CGATGCCGGC CGAAAGCATC CTGACCGGGC GGCGCGCGCT GGGCGTCGCC
CCCGACGGGG TGGTGCTGGA GGACGGGACG CTGATCGGGG CGGGCGGCGT GATCGACGCG
CGCGGGCCGG GCGACCTGTC GCTGCTAGAC CTCCATTACC GCAAGTTCGT CGGCTATGAG
CTGACCCTCG ACGGCCCGCA CAGCGTGCGC CGCGCGACGC TGATCGACGC CGCCGCCGAT
CCGGCCGAGG GCTTCCAATA TATGGAGATG CTGCCGATCG AGAACGACCG GCTGTTCATC
GAGGACGTCC GCTACGAAAG CTGGCCGGAG ATGGACATGG CCGACCATGG CAACCGCATC
GTCAACCATG CGGCGCGCTT CGGCTGGCGC ATCCGCAGCT CGGCGCGCGG CCAGGCGGGC
GTCCTGCCGA TCGCGCTGGG CGGCGACTTC GCCGACTATT GGCGATCGGG CGGCGAGGGC
GTCGCCAAGG CGGGCCTGCG CGCCGGGCTG TTCCACCCGG TCACCGGCAA TTCGCTGGCC
GATGCCGCGC GGGTCGCGCG GCTGGTCGCC GAAGCCGACG ACTGGTCGGG CGCGGCGCTC
CACGCCATGC TCCACGACCA TGCCGCGCGC GCCTGGGCGA AGCGGGCCTA TTATCGCCGC
TTCGCCACGC GGATGCTGCG CGATACTCCG CCGGCGGAAG GCTACAGGAT GCTCGAAAGC
CTCTATGCGA TGGACGCCGA CCTGATCGCG CGCTTCCACG CGATGCGCCT CGGCTTTGCC
GACCGCATGG CGCTCAGCCT CGGCGAGGGG CCGATGCCGG TCGGGGCGAT GTTCCGGCGA
TGA
|
|---|
| Protein sequence | MSGVMCDLAI IGGGLSGGLI ALAARRARPD RRVLLIEAAP TLGGAHLWSF LDSDVEAEDR
PLLEPLVNYG WREFAVVFPL YKRALPFPFY SIRSDRFDAA LREAMPAESI LTGRRALGVA
PDGVVLEDGT LIGAGGVIDA RGPGDLSLLD LHYRKFVGYE LTLDGPHSVR RATLIDAAAD
PAEGFQYMEM LPIENDRLFI EDVRYESWPE MDMADHGNRI VNHAARFGWR IRSSARGQAG
VLPIALGGDF ADYWRSGGEG VAKAGLRAGL FHPVTGNSLA DAARVARLVA EADDWSGAAL
HAMLHDHAAR AWAKRAYYRR FATRMLRDTP PAEGYRMLES LYAMDADLIA RFHAMRLGFA
DRMALSLGEG PMPVGAMFRR
|
|---|
| |