Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swit_2967 |
Symbol | |
ID | 5200463 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingomonas wittichii RW1 |
Kingdom | Bacteria |
Replicon accession | NC_009511 |
Strand | + |
Start bp | 3252005 |
End bp | 3252601 |
Gene Length | 597 bp |
Protein Length | 198 aa |
Translation table | 11 |
GC content | 74% |
IMG OID | 640582516 |
Product | TetR family transcriptional regulator |
Protein accession | YP_001263456 |
Protein GI | 148555874 |
COG category | [K] Transcription |
COG ID | [COG1309] Transcriptional regulator |
TIGRFAM ID | |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 31 |
Plasmid unclonability p-value | 0.699652 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.0717993 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGCTA CAAAAAAATC GCAAGGGCGT GGCAGGCCGC GCGGATTCGA TCCCGAGCAG GCGATCGCGA CCGCGCAGGC GCTGTTCCAG GAGAAGGGCT ATGACGGAGT CGGCGTCGCC GACATCGGCA AGGCGCTCGG CATCACCCCG CCCAGCTTCT ACAACGCCTT CGGCAGCAAG GCGGCGCTGT TCGACAAGGT GCTCGACCGC TATGCGGGCA GCTTCGGCCG CTTCGTGCCC GACGCGCTCG ACGGCGGCGG CGGGGTCGCC GAGGCGATCG CGCGGGTGCT GCGCGACGCG GCGCGGCTCT ATGCGCGCAA GGACGGGATC GCCGGCTGTC TGGTGCTCGA CGGCGCGCGC AGCAGCGGCG ATGCCGAGGC GGTCGCGCTG ACCCGGCGGA AGATGGAGGA GAGCCAGGCG CTGATCGCGG CGCGGATCGC CGCCGAGGCG CCCGACCGCG CCGACCGGCT CGCCTCGATC GTCGTGACGG CGCTCAAGGG CCTGTCGGCG GCGGCGCGCG ACGGCGCGAG CCCCGACGAG CTGCGCGCCT TCGCCGATGC GGCGGCGGCG GGGTTCCGGG TGGCGCTGGG GGAGTAG
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Protein sequence | MTATKKSQGR GRPRGFDPEQ AIATAQALFQ EKGYDGVGVA DIGKALGITP PSFYNAFGSK AALFDKVLDR YAGSFGRFVP DALDGGGGVA EAIARVLRDA ARLYARKDGI AGCLVLDGAR SSGDAEAVAL TRRKMEESQA LIAARIAAEA PDRADRLASI VVTALKGLSA AARDGASPDE LRAFADAAAA GFRVALGE
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