| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1908 |
|---|
| Symbol | |
|---|
| ID | 5200981 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 2137944 |
|---|
| End bp | 2139155 |
|---|
| Gene Length | 1212 bp |
|---|
| Protein Length | 403 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 640581453 |
|---|
| Product | extracellular ligand-binding receptor |
|---|
| Protein accession | YP_001262406 |
|---|
| Protein GI | 148554824 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGACGACAG GCTCCTCCCG TCCGTCGCGC ATGGCGGCGC TGCTCGCTGG CCTGCTGTCG
CTGGCCCAGG CCGGTCCGGC GGCGGCGCGC GACGCCCTGC CGCCGATCGT GATCGGCCAG
CTCTCCTCGC GCAGCGGCAA CAACCCGGCG GGGCGCGAGG GTGAGAATGG CGCGATGCAG
GCGGTGGCGG AGATCAACGC GGCCGGCGGC CTGCTCGGCG GGCACCGGCT GGAACTGCGG
GTCGAGGACG ATCAGACCCA GGTCGACGCC GGCATCGCCG CCTTTGCCCG TCTCGTCGAC
CAGGGTGCGG TCGCCGTCGT CGGCAGCTCC TTCTCCAATA TCAGCCTCGC GATCATCCCG
CATGTCGAGC AGGCTGGTAT TCCCTATCTC TCGACCGGCG CCGCGGACGG GCAGGTCGAT
CCGGTGCGGC CCCATGTCTT CATGACTTCG CTGGCCGGCC GGCTCGTCGG GGAGCAGCTC
CTCCGCTTCC TCCGCGACCG CGGCGTCACC CGGCTCGCGG TCGTCTATGA TCGCGACAGC
CGCTTCGCGA GCTCGGGCTG GGCGAAGCAG CGGACCCTGC TCGATCGCTA TGGCATCGCG
CTGGTCGAGG AGCAGGCCGT CCGCGTCGAC ACCCGGGATT TCGGCGCGAC CATCGCGGCG
CTTCGCGGCA GCGGCGCGCA GGCGGTGATG GCCTGGCTGA CCGGTCCGCC GGCGGTCGGC
TTCACCCGCG CCTATGCGGT CGCGAATGTC GGCCTGCCGG TGGTGGTGAG CCACGGCGTC
GCCAGCGGCG CCTTCCTCCG CGACACCGGC GCGGCGTCCG AAGGGCTGTT CGTCGCGACC
TCGATCGCCA CGCTCGCCGA CGACGCGCCG GTCTCGGCGG TCGGCGACGC GGCCCGCGCG
ATGGCGGCCG GCTTCCGCCG CGACCATGGC CATGGGCCGT CCCAATATGC GGTCGACGGC
TATGTCGCGA TACGGCTGAT CGCCGCCGCG ATCGAACGTA GCGGCAGCGC CAGCCCGCCC
GCGATCCGCG ACGCGCTCGA AGGCCTTACC CTCGCGACGC CGCAAGGCGT CTATCGCTAC
ACGCCGGACG ACCATGCCGG GCTCGGCGTG GCCGACATCG CGGTCGCCCG GGTGAAGGAC
GGGCGCTTCA CCCTGTCCGA CTGGTCGCGC CGGCAGCTCC GGGCCGACCG AGGATCGGAG
GTGGCGCGAT GA
|
|---|
| Protein sequence | MTTGSSRPSR MAALLAGLLS LAQAGPAAAR DALPPIVIGQ LSSRSGNNPA GREGENGAMQ
AVAEINAAGG LLGGHRLELR VEDDQTQVDA GIAAFARLVD QGAVAVVGSS FSNISLAIIP
HVEQAGIPYL STGAADGQVD PVRPHVFMTS LAGRLVGEQL LRFLRDRGVT RLAVVYDRDS
RFASSGWAKQ RTLLDRYGIA LVEEQAVRVD TRDFGATIAA LRGSGAQAVM AWLTGPPAVG
FTRAYAVANV GLPVVVSHGV ASGAFLRDTG AASEGLFVAT SIATLADDAP VSAVGDAARA
MAAGFRRDHG HGPSQYAVDG YVAIRLIAAA IERSGSASPP AIRDALEGLT LATPQGVYRY
TPDDHAGLGV ADIAVARVKD GRFTLSDWSR RQLRADRGSE VAR
|
|---|
| |