| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_1162 |
|---|
| Symbol | |
|---|
| ID | 5198665 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 1314758 |
|---|
| End bp | 1320490 |
|---|
| Gene Length | 5733 bp |
|---|
| Protein Length | 1910 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 640580709 |
|---|
| Product | alpha-2-macroglobulin domain-containing protein |
|---|
| Protein accession | YP_001261666 |
|---|
| Protein GI | 148554084 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2373] Large extracellular alpha-helical protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.434491 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTGGCG TCCTGAAACG GCTTGCTCCG GTCCTCCTGC TGCTCGCCTC GGTCGCCTCC
TCGCAGGGCG GCGGGCCGAG CGTGCTGTCC GCGGGGGCCG GCAACGACGT CGGCGGTTTC
CGCAGCTTCC AGATCCGTTT CTCGGCGCCG ATGGTCCCGC TCGGCGAGCC ACGCGCGCGC
GGGCCGTTCG ACGTCAACTG CCCGGTCGCG GGCAGCGGGC GCTGGTCCGA CCAGCAGAGC
TACAGCTATG AGTTCGCCGC CCCGCTGCCC GGCGGGTCGC GCTGCACGCT GACCTTGCGG
TCCGGCCTCG CCGGGCTCGA CGGCACGCCG CTGGTCGGCG AGCGCAGCGC CTATGTCCTC
GACAGCGGCG GGCCCGACGC CCGCGCCGTC CTGCCCGCGC GCTACGGCGG CTCGATCCAG
CAGGACCAGA CCTTCCTGAT CGCGACCAAC GTCCCCGCCG ATCGCGCCTC GATCGCCAGC
GAGGCCTATT GCGCGGTCGA CGGGATCGGC GAGAAGCTGC CGGTCGACGT GCTGCCCACC
GACGTGCCGC GCAAGCTGAT CGAGGGCCTG CCCAGCAACT ACCAGCTCAG CAACTTCCTC
GAGGAGGCCG GCCTCACCAT CGAGCGCGCC CGCGCGCCCG GCGGGCTGCG CAACCTCGTC
GCGCTGCGCT GCCGCCGGCC GCTGCCGCCA GGCCGCGACA TGGCGCTGGT CTGGCCGAAC
ACGATCAGCG GCGGCGGCCG CACCGCACTC GAGACGCGCC GCTTCGACTA TCGCGTGATC
GACGAATTCA CCGCGCGCTT CGAATGCACC CGCACCAATC CGCGCGCCGG CTGCAACCCG
GTCGAGCCGG CCTATGTCCG CTTCACCGCC CCGGTGCCGC GCGGCACGGC GGCGGCGGTA
CGCATCCGCC TGCCCGACGG CACCAGCATC GCCCCGGCCG GCTTCGACGA CGGCGACGAG
GGCGCCACCC CCTCGCCCAC CGTGCAGAGC GTGAAGTTCG AGATGGCGGC CGATCGCCCG
GCGACCGCCG CGACGCTGCT GCTGCCGGCG CGGGTGCTCG ACGAGAATGA CCGGCCGCTC
GCCAATGCCC GCCGCTTTCC GCTGCCGATC CGCTTCGACG CCGCGCCGCC GCTGGCGAAG
TTCGCCGCGA CCTTCGGCAT CCTCGAAGCG AGCGAGGGCG GCATGCTGCC GCTCACCGTC
CGCGCGATCG AGCCCAGGCT GTCGGCGAAA TCGCTGCCGA TCGACGGCAG GACGCTGCGG
CTCGGCGCCT CGGACGGCGA GGTCGCGGCC TGGCTGCGCC GGCTCGACGA CGCCGAGGAC
AGCAATTTCA CCGACGAGAA GCGCGGCGAC GAGACCGTCA CCGTCAACCA TACCCGCGAT
ACGCCGCTGC TCGCCCGCCA GCCGGGCCTG AAGCCGACCA GCATCCCGCT GCCAGGCAAG
GGCAAGGCGT TCGAGGTCGT CGGCATCCCG CTCGGCAAGC CCGGCTTCTA CGTGGTCGAG
GTGGCGAGCC CGACGCTCGG CCGCGCGCTG CTCGGCCGCA ACGCGGTCCG CTATGTCGCG
ACCGGCGCGC TCGTCACCGA CATGGCGGTC CATTTCAAAT GGGGCAATGC CAGCTCGCTC
GCCTGGGTGA CGCGCCTCGC CAGCGGCGAT CCGGTCGCGG GCGCCGCGAT CCAGGTCAGC
GACAGCTGCA CCGGCAAGCC GATCGCGCGC GGCACCACCG ACGCCTCGGG CCGGCTGCTG
ATCCGCGACA AGCTGCCGCA GCCGCAGACC TATGGCTGGT GCGACGGCGA TTCCCACCCG
CTGATGGTGT CGGCGCGCAA GGACGGCGAC TTCAGCTTCA CGCTGACGAG CTGGAGCAAG
GGCCTCAGCC CCTATGACTT CGACATGCCG TTCCAATATG AGGAACGGCC GCTGATCTTC
CACACCCTGT TCGATCGCAC GCTGATGCGC GCGGGCGAGA CGGTGCACAT GAAGCATCTG
CTGCGCCGCC CGATCGCGAC CGGCTTCGCG CCGATGGCGG CGACGGGCAC GCTGACCCTG
CGCCATCGCG GGTCCGACAC CAAATATGAG ATTCCGCTGA CGATCGGCCG CGACGGCATC
GCCCTGAGCG AATGGACCGC GCCCAGGGGC ACGCCGCAGG GCGACTATGA CCTGTCGCTC
CAGATCGGCA AGGACGAGGT CACGACGAGC CAGTCGGTGC GGGTCGACGA ATATCGCCTG
CCGACGATGC GCGCGACCGT GACCGGGCCG AAGCAGGCGC TGGTGCGGCC CAAGACCGTG
CCGGTGAACC TCTATGTCGG CTATTTGTCG GGCGGCGGGG CGGCCAACCT GCCGGTCGCC
GTCCGCACCA GCTTCGACCA GGCGACGCCG AGCCCGAAGG GCTGGGACGG CTGGAGCTTC
GGCGGCGCGC CGCTCAAGGA GGGCGTCACC CCGCTCGACG ACGACAATCG CGACCTCGCG
GCGCCGCTGC CGGGCGTCCA GCTGCTCGCG CTCAACCTCG ACCGGCAGGG CGCGGGCCGG
ACCAGCATCG CCATCCCCGA GACGGCCCGC GACGGCGCGA CGCTGACCGT CGAGATGGAC
TATCCCGACG CCAATGGCGA GACGCTGACG GCGACCCAGC GGATGGTGCT CAACCCCGCC
TCGCTCCAGC TCGGCATCCG CACCGACGGC TGGCTGATGA AGAAGGACGA CCTGCGCCTC
AAGCTGGTCG CGCTCGATCT CGACGGCAAG CCGGTCCAGG GACGCAGCGT CTCGGTCAAG
CTCTACAGTC GCGAGATATT GTCGTCGCGG CGGCGGCTGG TCGGCGGCTT CTACGCCTAT
GAGAACAATG CGAAGGTCAC CCGGCTGAAG CAGGGCTGCA CCGTCTTCAC CGACGCGCGC
GGGCTCGCCT CGTGCCAGCT CGATCCGGGC ATATCGGGCG AGGTCTATGC GGTCGCGACG
GTGCGTGACG GATCGGGCAA CGAGGCGCGG GCGGTGACCT CGGTCTGGCT GGCCGGCGGC
GACTGGTGGT TCGGCGGCGA CAATGGCGAC CGCATGGACG TCATCCCCGA GCAGCGCGAA
TATCGCGCGA CCGACACCGC CCGCTTCCAG GTGCGGATGC CGTTCCGCTC GGCGACCGCG
CTGGTGACGG TCGAGCGCGA GGGCGTGCTG TCGAGCTTCG TGACGAAGTT GTCGGGCAAG
GACCCGGTCG TCGAGGTGCC GTTGCAGGGC GCCTATGCGC CCGACGTCTA CGTCTCGGTG
CTGGCGGTGC GCGGGCGGGT CGCGGGCTGG CGGCTGTGGC TCGCCGATTT CGCCCGCCGC
TGGCACCTGC CCTTCTTCCA GGACCTTGCC GCGAAGCCGA CCGCTTTGGT CGACCTCGCC
AAGCCGAGCT TCCGGCTCGG CGTCGCGAAG ATCAACGTCG GCTGGGACCG CCACCGCCTC
GCCGTCGACG TCCAGGCCGA CCGCGCCAGA TATCATGTCC GCGACCGGGC CCAGGTCGCG
GTGCGGGTGA CCGGTCCCGA CGGCAAGCCG CCGCGCGCCG CCGAGATCGC CTTCGTCGCG
GTCGACGAGG CGCTGCTCGC GCTGTCGCCC AACGAGAGCT GGAAGCTGCT CGACGCGATG
ATGGGCGAAC GGCCGCTGGG CGTGCTCACC TCGACCGCGC AGATGCAGGT CGTCGGCAAG
CGCCATTACG GCCGCAAGGC GGTGGCGGCC GGCGGCGGTG GCGGCGGCGA CCTGACCCAG
GTCAACCGCG AGGACTTCCG TCCCGTGCTG CTGTGGAAGG GCCGCGTCCC GCTCGACGCG
TCCGGCATGG CCCGCGTCGC GGTGCCGCTG TCCGACGCGC TCTCCTCCTT CCGGCTCGTC
GCGATCGCCA ATGCCGGCGC CGACGGCTTC GGCACCGGCA GCACGACCGT CCGCACCCAG
CAGGACCTGA GCATCTATTC GAGCATCGCG CCGCTGGTGC GGTCGGGCGA CCGCTACGGC
GCCAGCTTCG TGCTGCGCAA CGGCTCCGAG AAGCCGATGA CGGTGACCGC CCAGGTCGCC
GCCAACCCGT CGATCGTCAA GGGACCGCCG CTGACCGTGT CGCTGCCCGC CGGCGGGGCG
AAGTCGGTCA CCTGGTGGCT GACCGCGCCG ACCGGGCTCG ACAAGCTCGG CTGGACGGTG
ACGGCGCGCT CGGCCGACGG CCGCTCCAGC GACCGGCTGA CCGTCGCCCA GACAATCGTT
CCCGCCGTCC CCGTCGACGT GTGGGCGGCG ACGCTGCTGC GTGTCGGGCC GCAATCGCTG
GTGCCGCTGA CCCCGCCGAT GGGCGCACTG CCCGGCCGCG GCGGGATCGA GGTGCGGCTG
AGCGACAGCA TTGCGCCGCC GCTCGACGGG GTGCGGCGCT ACATGCGCGA CTATCTGTTC
AACTGCTTCG AGCAGCGGCT GTCCAAGGCG ATCGTCGCGG GCGACATGGC GGCGTGGAAC
GGCCTCGCCG CCGATATGCC CGCCTATCTC GATCGCGACG GGCTGCTCCG CTACTTCCCC
GACGACCGGA TGGAGGGATC GGTCGCGCTG ACCGCCTATG TCCTGTCGAT CACCGCCGAG
GCGGGGCTGG TGGTGCCCGA GGCCGAACGG ACCCGGATGG TCGCGGCGAT GCGCTCGGTG
GTCGAGGGGC AGCTCAACCG CGACGTGCCC TGGTCCTACG ACCCGCGCGC CGAGAAGCTG
GCGGCGCTCG CCGCGCTCGC CCGCAACGGC GGATCGGAGC CGAGCCTGTT CGGCCAGATC
GGCATGGCCG CGCACGACAT GCAGACCTCG GCGCTGCTCG ACTGGCTCGG CGCGCTGCTC
CGCACCCCCG GCGCCGATCC GCGCGCGATC GCGGAGGCGG AAGCGGTGCT GCGCGGGCGG
ATCGCCTATG AAGGCTCGCG GCTCGACTTC GTCGACAGCG GCACCGCGCC CTGGTGGATG
ATGAGCTCGG GCGACGAGAT CGCCACCCGC GCGGTCGCCG TCCTCGCCGG CCGGCCGGGC
TGGCAGGACG AGCTGCCGCG CCTGCTGGTC GGCGCCGCGC TCCGCCAGCA GCGCGGCCAT
TGGGACACGA CCACCGCCAA TGCCTGGGGC GTGGTCGCGG TGCGGCGCTT CACCGGCCTC
TATCCGCCCG CCGCGGTCGC CGGCACCACC CAGGTCGACC TGCTCGGCCT GTCGCGGATG
GCGCGCTGGC CCTCCGCCGA GCCGGCGGTG CTGCGCTTCC CGCTGCCCGC GCAGCCGGCG
CCGATCCGCC TCTCGCATCC CGGCGAGGCC GGTCCCTGGG CGCAGATCCA GGTGTCGGCG
GCGGTGCCGA TGCAGCAGCC CTTCTTCGCG GGCTATCGCG TCAGCCGGCA GGTCGAGTTC
ATCCAGCGCC GCGACCCGAA GAAGATGAGC AAGGGCGACG TGCTACGCAT CCGGTTGACC
GTCGATGCCG GGGCCGAGCG CAACTGGGTG GTGGTCAGCG ACCCGATCCC GGCTGGCGCG
ACGATCGTCG GCGACCTGGG CGGCCAGTCG GCGACGCTGG CGGCGCAGGC CTCGGGCGGC
GACGGCGTCG GCCCCTCCTA TGTCGAGCGC GGCCAGGATG CGTGGCGCGG CTATTATCAA
TGGGTGCCGC GCGGCCGCTT CACCGTCGAA TATGCGGTGC GGCTCAACGC CCCCGGCCGT
TTCCAGATGC CGCCGACCAA GGTGCAGGCG ATGTATTCGC CCGAGATCCG CGCCGCGCTG
CCCAACGCAC GGATGTCGGT CTTCCCGCAG TGA
|
|---|
| Protein sequence | MRGVLKRLAP VLLLLASVAS SQGGGPSVLS AGAGNDVGGF RSFQIRFSAP MVPLGEPRAR
GPFDVNCPVA GSGRWSDQQS YSYEFAAPLP GGSRCTLTLR SGLAGLDGTP LVGERSAYVL
DSGGPDARAV LPARYGGSIQ QDQTFLIATN VPADRASIAS EAYCAVDGIG EKLPVDVLPT
DVPRKLIEGL PSNYQLSNFL EEAGLTIERA RAPGGLRNLV ALRCRRPLPP GRDMALVWPN
TISGGGRTAL ETRRFDYRVI DEFTARFECT RTNPRAGCNP VEPAYVRFTA PVPRGTAAAV
RIRLPDGTSI APAGFDDGDE GATPSPTVQS VKFEMAADRP ATAATLLLPA RVLDENDRPL
ANARRFPLPI RFDAAPPLAK FAATFGILEA SEGGMLPLTV RAIEPRLSAK SLPIDGRTLR
LGASDGEVAA WLRRLDDAED SNFTDEKRGD ETVTVNHTRD TPLLARQPGL KPTSIPLPGK
GKAFEVVGIP LGKPGFYVVE VASPTLGRAL LGRNAVRYVA TGALVTDMAV HFKWGNASSL
AWVTRLASGD PVAGAAIQVS DSCTGKPIAR GTTDASGRLL IRDKLPQPQT YGWCDGDSHP
LMVSARKDGD FSFTLTSWSK GLSPYDFDMP FQYEERPLIF HTLFDRTLMR AGETVHMKHL
LRRPIATGFA PMAATGTLTL RHRGSDTKYE IPLTIGRDGI ALSEWTAPRG TPQGDYDLSL
QIGKDEVTTS QSVRVDEYRL PTMRATVTGP KQALVRPKTV PVNLYVGYLS GGGAANLPVA
VRTSFDQATP SPKGWDGWSF GGAPLKEGVT PLDDDNRDLA APLPGVQLLA LNLDRQGAGR
TSIAIPETAR DGATLTVEMD YPDANGETLT ATQRMVLNPA SLQLGIRTDG WLMKKDDLRL
KLVALDLDGK PVQGRSVSVK LYSREILSSR RRLVGGFYAY ENNAKVTRLK QGCTVFTDAR
GLASCQLDPG ISGEVYAVAT VRDGSGNEAR AVTSVWLAGG DWWFGGDNGD RMDVIPEQRE
YRATDTARFQ VRMPFRSATA LVTVEREGVL SSFVTKLSGK DPVVEVPLQG AYAPDVYVSV
LAVRGRVAGW RLWLADFARR WHLPFFQDLA AKPTALVDLA KPSFRLGVAK INVGWDRHRL
AVDVQADRAR YHVRDRAQVA VRVTGPDGKP PRAAEIAFVA VDEALLALSP NESWKLLDAM
MGERPLGVLT STAQMQVVGK RHYGRKAVAA GGGGGGDLTQ VNREDFRPVL LWKGRVPLDA
SGMARVAVPL SDALSSFRLV AIANAGADGF GTGSTTVRTQ QDLSIYSSIA PLVRSGDRYG
ASFVLRNGSE KPMTVTAQVA ANPSIVKGPP LTVSLPAGGA KSVTWWLTAP TGLDKLGWTV
TARSADGRSS DRLTVAQTIV PAVPVDVWAA TLLRVGPQSL VPLTPPMGAL PGRGGIEVRL
SDSIAPPLDG VRRYMRDYLF NCFEQRLSKA IVAGDMAAWN GLAADMPAYL DRDGLLRYFP
DDRMEGSVAL TAYVLSITAE AGLVVPEAER TRMVAAMRSV VEGQLNRDVP WSYDPRAEKL
AALAALARNG GSEPSLFGQI GMAAHDMQTS ALLDWLGALL RTPGADPRAI AEAEAVLRGR
IAYEGSRLDF VDSGTAPWWM MSSGDEIATR AVAVLAGRPG WQDELPRLLV GAALRQQRGH
WDTTTANAWG VVAVRRFTGL YPPAAVAGTT QVDLLGLSRM ARWPSAEPAV LRFPLPAQPA
PIRLSHPGEA GPWAQIQVSA AVPMQQPFFA GYRVSRQVEF IQRRDPKKMS KGDVLRIRLT
VDAGAERNWV VVSDPIPAGA TIVGDLGGQS ATLAAQASGG DGVGPSYVER GQDAWRGYYQ
WVPRGRFTVE YAVRLNAPGR FQMPPTKVQA MYSPEIRAAL PNARMSVFPQ
|
|---|
| |