| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0686 |
|---|
| Symbol | |
|---|
| ID | 5200985 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | + |
|---|
| Start bp | 748568 |
|---|
| End bp | 750361 |
|---|
| Gene Length | 1794 bp |
|---|
| Protein Length | 597 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 640580230 |
|---|
| Product | beta-lactamase domain-containing protein |
|---|
| Protein accession | YP_001261191 |
|---|
| Protein GI | 148553609 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0491] Zn-dependent hydrolases, including glyoxylases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.459688 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCCCGTC CTCGCTCCCG CTACCATTGC ACCAAGGGAG AGGATGAGCG TGAAGCTGAT
GATCCGCGCC GGCCTGGCGC TGCTGCTGGC GACGAGCGGC CTGCCCGCCT CGGCGCGGGC
CTATCCGGCC GATCCGCTCG GTTCGCCGAT GTGGCAGGCC CATGCCCGCA TCCTGTTCGG
CGACGATCCG GTCCGCTTCG ATCCGCGCGT CCGCGTCGCC TTCCCCGCGA TCGCCGAGAA
CCAGCGGGTC TTTCCGGTCG CGGTCGACGC GCGGGGCATC GCCGGCGTGG TCCGGATCAT
CCTGTTCGCC GATCTCAACC CCATCCCGGT CGCGATCGAC TATCGCCCGC AAGCGGCCGA
GCCCTATCTC GCGACCCGGA TCAAGCTCGA CCAGCGGACA CCGGTGCGCG CGGCGGTGCA
ACTCGCCGAC GGGCAATGGC TGGTGTCGGG CCGCTGGATC GACGCGGCGG GCGGCGGCTG
CTCGGCCCCG CCGGTCAGCC GGGTCAAGGG CGACTGGGCT CGGCATCTCG GCGAGATGCG
CGGCGAGGCC TGGCCGACCG GCCCCGCCGC GAGCCGCCTG CGCGTCACCT TCCGCCATCC
GATGGACACC GGCCTGGTCG ACAACATCCC GACCTATCAT CTCGAAGCGC TGACGGTGAA
GGGCGGCGGG GGGCGCGTGC TGGGCAGCAT GGAGATCTGG GCGTCGGTGG CCGAGGACCC
GGCGATCACG CTGCTGCCCA GGGCCGGCGC GGGCGAGCCG CTGCGGATAG AAGCGCGCGA
CACCAACGGC CGCGATTATC GCGCCTCGGT GACGGTGGCG AAGCAATCGG CGCCCGCGCG
ATGAGGATCG ACCGGCGCAC CCTGCTCGGC GGCCTCGCGG GCTGTCTCGC CCTGCCGGCG
GCCGCCGCGC CGCCCGACTA TCGGATCGAT CCGGTCGCGG TCGCCGACGG CATCTGGATG
ATCCACGGCG CCGACGCGCC GATCGAACCC GGCAATGGCG GCGCGATCGC CAATATCGCC
ATCATCGATA CGCCCGCCGG CACGGTGCTG TGCGATTCCG GCCCCTCGCT GCGCTATGGC
CGCGCGCTCA AGGCGGCGGC GGAGAAGCTG ACCGGCAAGC CGGTGGTGCG GGTCTATGTC
ACCCATCTCC ATCCCGATCA TGGCATGGGC ATCGCCGCCT TCGATCCCGC GATCGTCGCG
GCGCTGCCCG GCACGATCGA GGACATGCGC CGCGACGGAC GCGGCTTTTC CGATGCGATG
TACCGGATGC TCAACGACTG GATGCGCGGC ACCGAACTGG TGCTGCCCGG CCGGCCGATC
GCGAACGATG CCGAGGATTT CGGCGGACGC CGGTTGCGGC TGATCGCGCT GTCGGGGCAC
AGCGCGGCCG ACCTCGTCCT GATCGACGAG CGCACCGGCC TGCTGGTCGG CGGCGACCTG
CTGTTCCACG ACCGCGCGCC CAGCACCCCG ACCGCCGACC TCGCCGCCTG GCGAGCCAGC
CTCGACCGTC TCGCGGCGCT CGACCACAAG GCGGCGATCC CCGGCCACGG CCCGTTCGAC
CCGTCGGGCC AGGAAGCGAT CGCCCAGACC CGCGACTGGA TCGACTGGCT GGAGACAACG
CTGACCGATG CGGTGCGATC GGGCCTCGAC ATGGTCGAGG CGGGCGAGCT GCCGATCCCC
GACCGCTTCG CGACGATGGC GGCGGCGCGC TACGAACTGC AACGCAGCGT GTCGCACCTT
TACCCGGCGA TCGAGGCCAG GCTGCTGCCG CGGATCGACG AACCAACCGA CTGA
|
|---|
| Protein sequence | MARPRSRYHC TKGEDEREAD DPRRPGAAAG DERPARLGAG LSGRSARFAD VAGPCPHPVR
RRSGPLRSAR PRRLPRDRRE PAGLSGRGRR AGHRRRGPDH PVRRSQPHPG RDRLSPASGR
ALSRDPDQAR PADTGARGGA TRRRAMAGVG PLDRRGGRRL LGPAGQPGQG RLGSASRRDA
RRGLADRPRR EPPARHLPPS DGHRPGRQHP DLSSRSADGE GRRGARAGQH GDLGVGGRGP
GDHAAAQGRR GRAAADRSAR HQRPRLSRLG DGGEAIGARA MRIDRRTLLG GLAGCLALPA
AAAPPDYRID PVAVADGIWM IHGADAPIEP GNGGAIANIA IIDTPAGTVL CDSGPSLRYG
RALKAAAEKL TGKPVVRVYV THLHPDHGMG IAAFDPAIVA ALPGTIEDMR RDGRGFSDAM
YRMLNDWMRG TELVLPGRPI ANDAEDFGGR RLRLIALSGH SAADLVLIDE RTGLLVGGDL
LFHDRAPSTP TADLAAWRAS LDRLAALDHK AAIPGHGPFD PSGQEAIAQT RDWIDWLETT
LTDAVRSGLD MVEAGELPIP DRFATMAAAR YELQRSVSHL YPAIEARLLP RIDEPTD
|
|---|
| |