| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0588 |
|---|
| Symbol | |
|---|
| ID | 5200722 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingomonas wittichii RW1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009511 |
|---|
| Strand | - |
|---|
| Start bp | 637097 |
|---|
| End bp | 638920 |
|---|
| Gene Length | 1824 bp |
|---|
| Protein Length | 607 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640580131 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001261094 |
|---|
| Protein GI | 148553512 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.221838 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTTCA TCGTTCGCAC GGTAGCGCGC ACCGCCGACG GGCGGGACAT CGTCCGCCCC
AAGAGCTTCG ACAAGGCCGA GCTGAGCATC GGCCGCAGCC CGTCGAGCGA CATCCACCTG
CCCGACCTGG CGGTGGCGCT GAACCATGCG GTGATCCGCA GCGCCGCGGG CGGCGCCGTC
GAGATCGTCG CGACCGCGGG CATGCCTTTC CTCGTCGACG GCAAGTCGAC CGAGCATGAG
CGCTTCTCCG CCTCGCCGGG CGCCAATATC CGCATCGGCA GCCATTCGCT GTCGGTCGAG
CCGGGCGAGG GCGACGAGAA GGGCGCGGTC GTCATCACCG TCGAACGCGT CGGCGCCATC
TCCAACGCGT CCGAGGAGAA GGAGGAGGCA CGGGTCTTCT CGCTGGCGTC GGTGCTGCCG
GGCCGGCGCA TCATGGCCTG GGCTGGCGTA TTGCTGGTGC TCGCGATCTT CCTCGCCTGG
CCGCTGGTGT CGATCCACAC CCAGCCGACA GACAATAGTC GCAAGGTCGC GTTCCACGCC
GACGAGCTGT GGACGTCGGG CAAGCTGTCG CAGGTCCATC GCAGCCTCGA GAACAACTGC
CAGGCCTGCC ATGTGAAGGC CGGAGAAGCG GTGCGCGATA CCGCCTGCGT CGCCTGTCAC
ACCAAGGTCC ACGACCATGC CGACAAGGCG AAGCTGCTGG AAGCCAAGGG CTCGCCCGGC
ATCATCGACG GCACCAAGCA GTTCGTCGGC GGGATCTTCG GCATCCAGCC CGGCCGCTGC
GTCGAATGCC ATACCGAGCA TCAGGGCCAG ACGGCGATGC CGGTGACCGA CGAGCGCTTC
TGCACCAACT GCCACGGCGA TATGAGCAAG CGGATCGACA CCGCGCTCAA GGACGCCGAT
GATTTCGGCG ATCACCATCC GCAGTTCGAG CCGACGATCC GCTTCGTCGG GGAGAACGGC
CTGCCGTCCT TCCGCCGCGT CTCGCTCGAC GCGAACCCGA AGGAGGACAA CGGCTTGAAA
TTCCCGCACG ATCTCCACCT GTCGACCACC AACGGCGTGG CGCAGATGGC GAAGACGCTG
GGCAAGGCCG AAGGCTATGG CGCGCCGCTC GATTGCGCCA ACTGCCACAT CCGCGACGCG
ACCGGATCGA GCTTCGTCGC GGTGAAGATG GAGCCGGCCT GCGGCGCCTG CCACTCGCTC
GCCTTCGATC AGGTCGGCGG CACGATCCGC ACCCTGCGCC ACGGCGATCC GGCCCAGGTC
GTCGCCGACA TCCGCGCCTT CTACCGCGCC GGCGCGCCCC GCAATCCCGC GTTGCAGGGC
ATGGACCGCC GCCGTCCGGG CGACTTCGCC AGCGCCGCGC AGCGCGCCAG CTTCGCGCAG
ACCAGCGCGA TGCACATCGG CAATGCCGAC CAGGCGATCC GCGCGGTCTT CTCGAAGGGC
GGGGCCTGCT TCGATTGCCA TACGGTCCGC GCGACCGGCA ATCCGACGAC GCCCTTCGCG
GTCACTCCGG TGGCGCTCAG CCGGCGCTAC ATGATGAAGG GCTGGTTCGA CCATGCCTCG
CACGACACCG AGAGCTGCGC GAGCTGCCAT GCGGTGAAGG GATCGAAGCT GTCGTCCGAC
GTCAACCTGC CGAAGCTGGC CAAATGTCAG GAATGCCATG GCGGCCAGGA CGCGCACAAG
GAAGTGCCGT CGGCCTGCGC GATGTGCCAC GACTATCACC GGAACGACTT CGCTCCGCTG
ATGGTTCGCG ACAATCGCGC CCGCGGCAAG GCGGTCGAAC ATATCCGGGA GAAAGCGCTG
AAGCAGGCAG GTACCGGTAT TTAA
|
|---|
| Protein sequence | MSFIVRTVAR TADGRDIVRP KSFDKAELSI GRSPSSDIHL PDLAVALNHA VIRSAAGGAV
EIVATAGMPF LVDGKSTEHE RFSASPGANI RIGSHSLSVE PGEGDEKGAV VITVERVGAI
SNASEEKEEA RVFSLASVLP GRRIMAWAGV LLVLAIFLAW PLVSIHTQPT DNSRKVAFHA
DELWTSGKLS QVHRSLENNC QACHVKAGEA VRDTACVACH TKVHDHADKA KLLEAKGSPG
IIDGTKQFVG GIFGIQPGRC VECHTEHQGQ TAMPVTDERF CTNCHGDMSK RIDTALKDAD
DFGDHHPQFE PTIRFVGENG LPSFRRVSLD ANPKEDNGLK FPHDLHLSTT NGVAQMAKTL
GKAEGYGAPL DCANCHIRDA TGSSFVAVKM EPACGACHSL AFDQVGGTIR TLRHGDPAQV
VADIRAFYRA GAPRNPALQG MDRRRPGDFA SAAQRASFAQ TSAMHIGNAD QAIRAVFSKG
GACFDCHTVR ATGNPTTPFA VTPVALSRRY MMKGWFDHAS HDTESCASCH AVKGSKLSSD
VNLPKLAKCQ ECHGGQDAHK EVPSACAMCH DYHRNDFAPL MVRDNRARGK AVEHIREKAL
KQAGTGI
|
|---|
| |