| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0468 |
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| Symbol | |
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| ID | 5200104 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 499717 |
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| End bp | 502449 |
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| Gene Length | 2733 bp |
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| Protein Length | 910 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640580007 |
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| Product | surface antigen (D15) |
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| Protein accession | YP_001260974 |
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| Protein GI | 148553392 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4775] Outer membrane protein/protective antigen OMA87 |
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| TIGRFAM ID | [TIGR03303] outer membrane protein assembly complex, YaeT protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.944558 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACGGCGA CGACGACGAA CATCCATCGG GCGCGGCTAT TGTCGGCGCT CCTCGTCGGC
ACGATGCTCG GCGGGCTGGC GCAGCCGGCG ATGGCGCAGC AGGCCCCGGC TCCCGAACCC
GCGGCTCCGG CCGCCCAGCC CGTTGTGCTG GGACCGGCGC AGACGCTGGG CACCATCAAG
TCGGTCAACG TCGCCGGGTC GGAGCGTCTC GAGGCCGACA CGGTGCGCTC CTACGTCAAG
CTCGCCCCGG GCGAGAGCTA CACCCGCGAG GCGCTCGACC AGGCGCTGAA GGACCTCTAC
GAGACCGAGC TGTTCGCCGA CGTGCAGGTG CGCGACGACG GGCAGGGCAA CATCACCCTC
CAGGTCCGCG AGAACCCGGT CGTCAACCGC ATCGTGCTGG AAGGCAACAA GCGGCTCAAG
GCCGACAAGA TCAATCCGGA GATCAAGCTG GCGCCGCGCC AGATCTTCAC CCGGTCGAAG
GTCCGCGCCG ACGTCAACCG CATCATCGAG CTGTATCGCC GCCAGGGCCG CTTCGCCGCG
ACCGTCGAGC CGAAGATGGT CCAGCTCGAC CAGAACCGCG TCGACATCAT CTTCGAGATC
CACGAGGGCG ACAAGTCGAA GGTCCGCAAG ATCAACATCA TCGGCAACGA GAAATTCTCG
GACGGCCGCC TGCGCGGCGA GATGGCGACC AAGCAGACCG GCCTCACCAA GATCTTCTCG
TCGGGCACCA GCTACGATCC CGACCGCATG TCCTACGACC AGCAGAAGCT GCGTCAATAT
TATCTGACGC AGGGCTATGC CGACTTCCGC GTCGTGTCCG CCGTTGCCGA GCTGACGCCG
GACAAGAAGG ACTTCATCAT CACCTATGTC GTCGAGGAAG GCTCGCGCTA CAAATTCGGC
GACGTCGACC TCGAAAGCGA GATCCGCGAC ATCAAGGCGT CGACCTTCAA ATATCTGCTG
CCGATGAAGA AGGGCGACTG GTACAACGCG AAGCAGGTCG AGGACACCGT CGACGCCATC
ACCGAGGCGA CCGGCGTGTT CGGCTTCACC CCCGACGTCC GTCCGGACTT CAACCGCGAC
AAGGACGACC TGACCATGGG GGTGGTCTTC AAGATCAACC AGAGCCCCCG CGTCTATGTC
GAGCGGATCG ACATCAACGG CAACACCCAC ACCAAGGACA AGGTCGTCCG CCGCGAATTC
CGGCTGTCGG AAGGCGACGC CTTCAACAGC TTCAAGGTCA AGCGCTCGCG CGACCGCATC
CAGTCGCTCG GCTTCTTCCA GGACAAGTTC GAGGTCGAGC AGAAGCCCGG ATCGGCGCCC
GACCGCGTCG TGCTGGAGGC GAACGTCGAG GAGAAGTCGA CCGGCGAGCT GCAGGTGTCG
GCGGGTTATT CGAGCCTCGA GCGCTTCATC GTCGACCTGT CGATCCGCGA GCGCAACTTC
ATGGGCAAGG GGCAGGAGCT CCGCGCCGGG GTCAGCTACT CGACCTATTC GAAGTCGATC
GAGCTGGGCT TCACCGAACC CTATGTGTTC GACAAGAACA TCGCGGTCGG CGTCGACCTG
TTCCGGCGCG ACTACAACTC GTTCAACTTC GCCGGCAACG ACCGCAACAC CACCTATGAG
CAGACCACGA CCGGCTTCCA GCTCCGCGCC GGCGTGCCGC TGACCGAGTT CATCACCCTC
GCGACGCGCT ACGGCCTCAG CTATGATCAG GTGTCGCTGA ACAAGTTCAC CTATTACACC
GATACCAATG GCGACGGCAT CCGCGACGCC TGCGACCCGG TGGTGGCGGG GCGCTATCTC
TGCGACGCGA TCGGCAACCG GGTGACCTCG TCGGTCGGCT ACTCGCTGGT GTTCGACAAC
CTCAACAACC GCATCCGCCC GTCGCGCGGC CAGCGCGCCG TGTTCAGCCA GGATTTCGCC
GGCCTCGGCG GCAAGGTCCG CTATATCAAG ACCTCGGTGC AGGCGACCAA ATATTGGGGC
ATCGGCGGCG GCTTCATCTT CTCGGCAGGC GGCGAGGGCG GCTACATCAA GGGTCTCGGC
CAGGACGTCC GCCTGATCGA CCGCTTCTAT CTCGGCGAGC CGGACATGCG CGGCTTCGGC
ATCCGCGGCG TCGGCCCGCG CGTGATCCGC CGCTACATCG ATCCCAACAC CGGCCAGTTC
GCGGCGGTCA ACGACAAGAA CTACACCAAT GACGACGCGC TCGGCGGCAA GGCCTATTAT
CGCGGCCGCC TCGAAATGGA GATACCGCTC GGCAACGGCG CCCGCGAGCT CGGCCTGCGT
CCGTCGATCT TCATGGACGT CGGCGCCGTG TTCGGCGTGT CGAAGCCGTC GCTGATCGCG
CCGGAGAATC CCGGCTATCC GTTCCAGCAG GATGAGGACG GCAACTATCT GCCGGTGCTG
CGGCCGCTGC TCGACAGCAA GGGCCGCCAG CTCTTCATCA CGGCCGAAGG CAATGACAAC
GCAGGCACCT ATACGCTCTG CGAGATCGGC TATTCGTCCT CGTCGAAGAA GCCCTGCGTC
GGCAGTGTCA TGAACACGAA GGCCCAGAAT ACGATCAGCC CGTTCCGCGA GGATTTCTAC
GGCGACTCCG CCAAGCCGCG CCTCTCGGTC GGCTTCGGCG TCAACTGGAA CTCGCCCTTC
GGTCCGTTCC GCATCGATAT CGCCAAGGCT CTCCTCAAGG AGCCGGGCGA CAACACCAAG
CTCTTCACTT TCAACGTAGG GACACAGTTC TGA
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| Protein sequence | MTATTTNIHR ARLLSALLVG TMLGGLAQPA MAQQAPAPEP AAPAAQPVVL GPAQTLGTIK
SVNVAGSERL EADTVRSYVK LAPGESYTRE ALDQALKDLY ETELFADVQV RDDGQGNITL
QVRENPVVNR IVLEGNKRLK ADKINPEIKL APRQIFTRSK VRADVNRIIE LYRRQGRFAA
TVEPKMVQLD QNRVDIIFEI HEGDKSKVRK INIIGNEKFS DGRLRGEMAT KQTGLTKIFS
SGTSYDPDRM SYDQQKLRQY YLTQGYADFR VVSAVAELTP DKKDFIITYV VEEGSRYKFG
DVDLESEIRD IKASTFKYLL PMKKGDWYNA KQVEDTVDAI TEATGVFGFT PDVRPDFNRD
KDDLTMGVVF KINQSPRVYV ERIDINGNTH TKDKVVRREF RLSEGDAFNS FKVKRSRDRI
QSLGFFQDKF EVEQKPGSAP DRVVLEANVE EKSTGELQVS AGYSSLERFI VDLSIRERNF
MGKGQELRAG VSYSTYSKSI ELGFTEPYVF DKNIAVGVDL FRRDYNSFNF AGNDRNTTYE
QTTTGFQLRA GVPLTEFITL ATRYGLSYDQ VSLNKFTYYT DTNGDGIRDA CDPVVAGRYL
CDAIGNRVTS SVGYSLVFDN LNNRIRPSRG QRAVFSQDFA GLGGKVRYIK TSVQATKYWG
IGGGFIFSAG GEGGYIKGLG QDVRLIDRFY LGEPDMRGFG IRGVGPRVIR RYIDPNTGQF
AAVNDKNYTN DDALGGKAYY RGRLEMEIPL GNGARELGLR PSIFMDVGAV FGVSKPSLIA
PENPGYPFQQ DEDGNYLPVL RPLLDSKGRQ LFITAEGNDN AGTYTLCEIG YSSSSKKPCV
GSVMNTKAQN TISPFREDFY GDSAKPRLSV GFGVNWNSPF GPFRIDIAKA LLKEPGDNTK
LFTFNVGTQF
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