| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0431 |
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| Symbol | |
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| ID | 5198953 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | - |
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| Start bp | 456336 |
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| End bp | 458360 |
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| Gene Length | 2025 bp |
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| Protein Length | 674 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640579970 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_001260937 |
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| Protein GI | 148553355 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.213243 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGAAGA CGAACGGGAG CGAGGGTGGC GATCGAATCG ACGGCGACGC CCCGCTCATC
GATCTCAACG AAGGATCGCT CAAGAAGCTG ATCGCCCGCG CGAAGCGCAA GGGCTACATC
ACCTACGAGC AGCTCAACGA GGCGCTGCCG CAGGACCAGA TGACCTCCGA CCAGCTCGAA
GACGTGATGT CCGCGCTCAA CGAGATGGGC GTGAACATCG TCGAGAACGA GGATGCCGGC
GAGGACGAGC AGCCCGAGGA GGACGGCATC GACGAGGTCG CCGGCTCCGA GGAAGGCGAT
ACCGGCCCTG CCCTCACCAC CACGGCGAAG AAGGAAACGG TCGACCGCAC CGACGATCCG
GTGCGCATGT ACCTGCGCGA GATGGGCGCC GTCGAGCTGC TCAGCCGCGA GGGCGAGATC
GCGATCGCCA AGCGCATCGA GGCCGGCCGC GACACGATGA TCCTGGGCCT CTGCGAGAGC
CCGATCACCT TCAACGCGAT CATCGAATGG TCGAACGCGC TCAACGAGGG CACGATGCAG
CTGCGCGAGA TCCTCGATCT CGACGCGATG CTGTCGAAGG GGCCGACCGC CGAGCAGGTC
GAGAACGAGG ACGCCGACGC CGAGATATCG GCCGAGACGG CCGGCCCGAC CTTCAAGGAG
GAGGAAGAGC CCGAGGAGGA GGCCTCCGCC GACGAGGACG AGGATTCGAT GACCGAGCGG
CGCGCTCCGC GCCCGCAGGA AGACGACGAC GAGGACAACA CCCTCAGCCT CGCCCAGATG
GAAGAGCAGC TCAAGCCGAT GGCGCTCGAG CGGTTCGCGG CGATCACCGA TCTCTACAAG
ACCTTCTCGC AGGTCCAGTC CGCGCGCGTC GCCGCGCTCG GCGTCGGCGA CGACTTCCCG
GCCGCCGAGG AGGAGCGCTA CCAGGGCCTG CGCGAGCAGC TCACCGCCGA GGTCGAGAGC
GTCCAGTTCC ACGGCGCGAA GATCGAATAT CTCGTCGACC AGCTCTATTC GTTCAACCGC
CGGCTGACCA CGCTGGGCGG GCAGATGCTG CGCCTGGCCG AGCGCCACAA GGTGCCGCGC
CGCGACTTCC TCGAAGCCTA TGTCAACCAC GAGATGGAGG ACGGCTGGCT CGACCGGGTC
GGCCGGATCG ACAAGAAGTG GGCGAATTTC GCGGCCAACG AGGCCGACGC GGTCGATCGC
ATCCGCAACG AGATCGGCGA GATCGCCCAG GCGACCGGCA TGGCGCTCAG CGAGTTCCGC
CGCATCGTCA ACATGGTGCA GAAGGGCGAG CGCGAGGCGC GCATCGCGAA GAAGGAGATG
GTCGAGGCCA ATCTCCGCCT CGTCATCTCG ATCGCCAAGA AATACACCAA TCGCGGCCTG
CAGTTCCTGG ACCTGATCCA GGAGGGCAAT ATCGGGCTGA TGAAGGCCGT CGACAAATTC
GAATATCGCC GCGGCTACAA GTTCAGCACC TATGCGACCT GGTGGATCCG GCAGGCGATC
ACCCGCTCGA TCGCCGACCA GGCGCGGACG ATCCGCATCC CGGTCCACAT GATCGAGACG
ATCAACAAGC TGGTCCGCAC GAGCCGCCAG ATCCTGCACG AGATCGGCCG CGAGCCGACC
CCGGAGGAAC TGGCCGAGCG GCTGTCGATG CCGCTCGAGA AGGTCCGCAA GGTGATGAAG
ATCGCCAAGG AGCCGATCAG CCTCGAGACG CCGATCGGCG ACGAGGAGGA CAGCCATCTC
GGCGACTTCA TCGAGGACAA GAACGCGATC ATCCCGGTCG ATGCCGCGAT CCAGTCCAAC
CTGAAGGAAA CCGTCACCCG CGTCCTCGCC AGCCTCACCC CGCGCGAGGA GCGCGTGCTG
CGCATGCGCT TCGGCATCGG CATGAACACC GATCACACGC TGGAGGAGGT CGGCCAGCAA
TTCTCGGTGA CGCGCGAGCG CATCCGCCAG ATCGAGGCGA AGGCGCTTCG CAAGCTCAAG
CATCCGAGCC GCAGCCGCAA GATGCGGAGC TTCCTCGACC AGTAA
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| Protein sequence | MAKTNGSEGG DRIDGDAPLI DLNEGSLKKL IARAKRKGYI TYEQLNEALP QDQMTSDQLE
DVMSALNEMG VNIVENEDAG EDEQPEEDGI DEVAGSEEGD TGPALTTTAK KETVDRTDDP
VRMYLREMGA VELLSREGEI AIAKRIEAGR DTMILGLCES PITFNAIIEW SNALNEGTMQ
LREILDLDAM LSKGPTAEQV ENEDADAEIS AETAGPTFKE EEEPEEEASA DEDEDSMTER
RAPRPQEDDD EDNTLSLAQM EEQLKPMALE RFAAITDLYK TFSQVQSARV AALGVGDDFP
AAEEERYQGL REQLTAEVES VQFHGAKIEY LVDQLYSFNR RLTTLGGQML RLAERHKVPR
RDFLEAYVNH EMEDGWLDRV GRIDKKWANF AANEADAVDR IRNEIGEIAQ ATGMALSEFR
RIVNMVQKGE REARIAKKEM VEANLRLVIS IAKKYTNRGL QFLDLIQEGN IGLMKAVDKF
EYRRGYKFST YATWWIRQAI TRSIADQART IRIPVHMIET INKLVRTSRQ ILHEIGREPT
PEELAERLSM PLEKVRKVMK IAKEPISLET PIGDEEDSHL GDFIEDKNAI IPVDAAIQSN
LKETVTRVLA SLTPREERVL RMRFGIGMNT DHTLEEVGQQ FSVTRERIRQ IEAKALRKLK
HPSRSRKMRS FLDQ
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