| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swit_0167 |
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| Symbol | |
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| ID | 5197046 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingomonas wittichii RW1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009511 |
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| Strand | + |
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| Start bp | 159290 |
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| End bp | 160606 |
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| Gene Length | 1317 bp |
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| Protein Length | 438 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 640579706 |
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| Product | conjugal transfer protein TrbL |
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| Protein accession | YP_001260676 |
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| Protein GI | 148553094 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3846] Type IV secretory pathway, TrbL components |
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| TIGRFAM ID | [TIGR02783] P-type conjugative transfer protein TrbL |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.281494 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGAATA CGGGCGTCAT CGATCGCTTC CTCGACCTGT TCGGCCGCTA CATCGATTCG
GGCTTCGGCC TGATTGGCGG CGACGTCGGG TTCCTCGCCA GCGCGCTCAT CGTCATCGAC
GTGACGCTCG CCTTCCTGTT CTGGACCTGG GGCGGCGACG AGGACATCAT CGCCCGGCTG
GTCAAGAAGA CCCTGCAGGT CGGGTTCTTC GCGTTCCTGA TCTCCAACTG GAACGCGCTG
GCGCAGGTCA TCTATCTGAG CTTTTCGGGC ATCGGCCTCA AGGCCGCCGG ATCGGGAAGC
CCTGACGATC TGCTCCATCC CGGCCGGATC GCGCAGGTCG GCATCGACGC CGGGCGGCCG
CTCATCGAGC AGGCTTCCGA GCTCGCCGGC CCGGTCGGCC TGTTCACCAA TTTCGCGGAG
ATCGCGGTGC TGCTGATCGC CTGGGCGATC GTGCTGCTCG CCTTCCTGAT CATCGCGATC
CAGATCTTCG TCACCCTGAT CGAGTTCAAG CTCGTGACCC TGGCCGGGTT CGTGCTGGTG
CCCTTCGGCC TGTTCGGCCG CACCGCCTTC CTCGCCGAGC GGGTGCTCGG CAATGTCATG
GCGACTGGCG TCAAGGTGCT GGTCCTCGCC ATCATCATCG GCATCGGCTC GACCATCTTC
GACGAGTTCG TGCGCGATTT CGGGGGCACG CCGCCCGATC TCGAGCAGGT CGCGAGCCTG
GCGCTCGCGG CGCTCACCCT GCTCGGCCTC GCCATCTTCG GCCCCGGCAT CGCCGCCGGC
CTGGTCTCGG GCGGCCCGCA ATTGGGTGCC GGCGCCGCGG TCGCCACCGG CATCGTCGCC
ACCGGCGCGG GCGCGGCGGT CGGCATGGGC GCCGCCAGCC TGGCCGGAGC CGGGGCACGC
GCCGGCACGC GCGCCGCCGG TTCGCTCTCC TCCCGGTCCG CCGCCCGCGC GAGCGGTGGA
TCCCCGTCGG CGCCATCGCC CCCTCCGGCG CCGGCGGGCG GCGCGCCCGC GGTTCCCCCG
CCGTCGGGCG CGCCGAAGGG GGGCGGCGCT TCGGCTACTC GATCGCCCGC GCCAGCATCG
TCCGGTGCCC CGGCATCGGC CGTAGAGACT GAAAGCCCGA CAGCCGCATC GTCACCCGAT
CCTGTCGTCA CCGGTGGACC GGCATTGCCC CCCGCCGCGC CGCATGCGCC GGCCTGGGCG
AACCGGCTGC GCCGCCGCCA GGCGATGATG CAAGGCGCAA CCATGGCCGC CTATGCACTG
CGCTCGTCGG ACTCCGGCGG CGGCGCGGCG CAGATTTCCG TGGAGGACCG TTCATGA
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| Protein sequence | MQNTGVIDRF LDLFGRYIDS GFGLIGGDVG FLASALIVID VTLAFLFWTW GGDEDIIARL
VKKTLQVGFF AFLISNWNAL AQVIYLSFSG IGLKAAGSGS PDDLLHPGRI AQVGIDAGRP
LIEQASELAG PVGLFTNFAE IAVLLIAWAI VLLAFLIIAI QIFVTLIEFK LVTLAGFVLV
PFGLFGRTAF LAERVLGNVM ATGVKVLVLA IIIGIGSTIF DEFVRDFGGT PPDLEQVASL
ALAALTLLGL AIFGPGIAAG LVSGGPQLGA GAAVATGIVA TGAGAAVGMG AASLAGAGAR
AGTRAAGSLS SRSAARASGG SPSAPSPPPA PAGGAPAVPP PSGAPKGGGA SATRSPAPAS
SGAPASAVET ESPTAASSPD PVVTGGPALP PAAPHAPAWA NRLRRRQAMM QGATMAAYAL
RSSDSGGGAA QISVEDRS
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