Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Svir_14570 |
Symbol | |
ID | 8386790 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharomonospora viridis DSM 43017 |
Kingdom | Bacteria |
Replicon accession | NC_013159 |
Strand | + |
Start bp | 1503533 |
End bp | 1506349 |
Gene Length | 2817 bp |
Protein Length | 938 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 644975536 |
Product | translation initiation factor 2 |
Protein accession | YP_003133324 |
Protein GI | 257055492 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0532] Translation initiation factor 2 (IF-2; GTPase) |
TIGRFAM ID | [TIGR00231] small GTP-binding protein domain [TIGR00487] translation initiation factor IF-2 |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.00182457 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.54145 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGCAGGCA AAGCCCGCGT ACATGAGCTC GCGAAAGAGC TCGGTGTCAC GAGCAAGGAA GTACTCGCCA AGCTGAAGGA GCAGGGCGAG TTTGTGAAGT CCGCGTCATC CACCGTCGAG GCTCCCGTGG CCCGACGGCT GCGTGACGCG TTTTCGAAGA AGGACGATCA GCAGGCGGAG AAGGCTCCCG ATAAGGGCAA GCCCTCGATG GTGAGGTCGA CGACGCCGAG GCGTGGCGAG ACCGGTACTC CCACACCGAA GCCGGCGCCG CCGCAGCCGC AGGCGGGGCA GCCTCAGGCG AAGCCCGAGC AGCCACCGGT GCCGAAGCCG GGGCCACGGC CGGTGCCGAA GCCCGGTCCG AAGCCGGGGC CGATCCCCAA GCCGGGTGAG CAGGCTCCGG CGGCGAAGGC GACGCCGAAG GATCAGCAGG GTTCCGTCGT TCCGCCGAAG CCGCAGGGTC CGAAGCCCGG TCCGAAGCCG GGTCCGCGCC CGCCACGGGT CGGCAACAAC CCGTTCGGTG TGGGATCCGG TGCTCCCGCT CCGCGTCCTG CGCCGCCACG TCCTGGGGGC GGGCAGAGTG ATCGCGCTCC GCGTCCGGGT GGCGAGCGTC CGGCGAGCCC CAAGAGCGGT GCTCCCAGGC CGCATCCGGG CAACATGCCG CCGCGTCCCA ACCCCGGCAT GATGCCGCCG CGTCCGCCGC GTCCGGCCGG CGGCCCCGGT GGGCGTAGCG GTGGTCCCGG TGGCCGCGGC GGCCCCGGTG GTCGTGGTGG AGCTCCGCGT ACCGGCGGCG GTTTCCGCGG TGGACCGGGC GGTGGTGGCG GCGGCTTCCG TGGCGGTCCC GGTGGCGGCG GTGGTTTCCG TGGCGGCCGG GGTGGTCCCG GTGGTCGTGG TGGAACGGCC GGTGCCTTCG GGCGTCCGGG CGGTCCCTCG CGCAAGGGCC GTAAGTCGAA GCGGCAGAAG CGCCAGGAGT ACATGGAGAC CATGCAGGCG CCGTCGGTCG GCGGCGTGCG TCTGCCGAAG GGCAACGGCG AGACCATCCG GTTGCCGCGT GGTGCGTCGT TGACCGACTT CGCGGAGAAG ATCAACGCGA ACCCGGGCTC CCTGGTGCAG GTGCTCTTCC ACCTCGGTGA GATGGTCACC GCGACGCAGT CGGTCTCCGA GGACGTGCTG GAACTGCTCG GCTCGGAGAT GAACTACAAC GTCCAGGTGG TCAGCCCCGA GGAGGAGGAC CGCGAGCTGC TCGAGGCGTT CGACATCAAC TTCGGTACGG ACGCCGGTAG CGAGGAGGAC CTGCGGCCCA GGCCGCCGGT GGTGACCGTC ATGGGTCACG TCGACCACGG TAAGACCAGG TTGCTGGACA CCATCCGGCA GACGAAGGTC GGTGAGGCCG AGGCCGGTGG CATCACCCAG CACATCGGTG CCTACCAGGT CAAGACGGAG GTCGACGGCG AAGAGCGGCT GATCACCTTC ATCGACACCC CGGGTCACGA GGCGTTCACC GCCATGCGTG CCCGTGGTGC GCAGGCCACC GACATCGCCG TGATCGTGGT CGCGGCCGAC GACGGTGTGA TGCCGCAGAC GGTGGAGGCG ATCAACCACG CGCAGGCCGC CAAGGCGCCC ATCGTGGTCG CGGTCAACAA GATCGACGTC TCGGGCGCGA ACCCGGCGAA GGTTCGCCAG CAGCTCACCG AGTACGGCCT GGTGGCCGAG GAGTACGGCG GCGACACGAT GTTCGTCGAC ATCTCGGCCA AGCAGGGCAC GAACATCGAC GGGCTGCTCG AGGCGATCGT GTTGACCGCC GACGCGGCGC TGGACCTCCG GGCGAACCCG GACATGGAGG CCCAGGGGGT GGCCATCGAG GCGCACCTCG ACCGCGGCCG CGGTCCGGTG GCCACGGTGC TGGTGCAGCG CGGAACCCTG CGAGTGGGCG ACTCGGTCGT CGCGGGCGAC GCCTACGGTC GAGTGCGACG CATGGTGGAC GAGTACAACC GGGACGTCAC CGAGGCGAAG CCGTCGCGGC CGGTCCAGGT CATCGGCTTC ACATCGGTGC CGAGGGCCGG TGACACGTTC CTCGTCGTCG AGGAGGACCG GGTGGCCCGG CAGATCGCCG AGCGCCGCCA GGCTCGGATC CGCAACGCCG AGAACGCCGC CAGGCGCAAG CGTGTCAGCC TGGAGGACCT GGACTCCGCG TTGAAGGAGA CCAACACCCT CAACCTGATC ATCAAGGGCG ACAACTCGGG TACCGTCGAG GCGCTCGAAT CGTCCCTGAT GCAGATCGAC GTCGGCGACG AGGTGGAGCT CAACATCGTC CACCGCGGTG TGGGTGGTGT CACCGAGAGC GACATCGACC TCGCCACGGC GTCCGACGCG GTCGTGATCG GGTACAACGT GCGTGCGCAG GGCAAGGCGA CCGAACGCGC CACGCGCGAG GGTGTCGACG TCCGGTACTA CACGGTGATC TACCAGGCGA TCGAGGAAAT CGAGCAGGCC CTGAAGGGCA TGCTCAAGCC GGTGTACGAG GAGGTCGACC TCGGTAGGGC TGAGGTCCGT GAGGTGTTCA AGTCCTCGAA GGTCGGCACC ATCGCCGGTT GTCTGGTCAC GTCGGGTGAG ATCCGGCGTA ACTCCAAGGC ACGCCTGCTG CGTGACGGCG TGGTTGTCGG GGAGAACCTC CCGGTCAGCT CGCTGCGGAG GTTCAAGGAC GACGTCGTGG AGGTCCGCGA GGGCTTCGAA TGCGGTCTCA CGCTCGGCAA GTTCTCCGAC ATCAAGGTCG GTGACGTGAT CGAGACGTAC GAGCTCCGCG AGAAGCCGCG CGAGTGA
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Protein sequence | MAGKARVHEL AKELGVTSKE VLAKLKEQGE FVKSASSTVE APVARRLRDA FSKKDDQQAE KAPDKGKPSM VRSTTPRRGE TGTPTPKPAP PQPQAGQPQA KPEQPPVPKP GPRPVPKPGP KPGPIPKPGE QAPAAKATPK DQQGSVVPPK PQGPKPGPKP GPRPPRVGNN PFGVGSGAPA PRPAPPRPGG GQSDRAPRPG GERPASPKSG APRPHPGNMP PRPNPGMMPP RPPRPAGGPG GRSGGPGGRG GPGGRGGAPR TGGGFRGGPG GGGGGFRGGP GGGGGFRGGR GGPGGRGGTA GAFGRPGGPS RKGRKSKRQK RQEYMETMQA PSVGGVRLPK GNGETIRLPR GASLTDFAEK INANPGSLVQ VLFHLGEMVT ATQSVSEDVL ELLGSEMNYN VQVVSPEEED RELLEAFDIN FGTDAGSEED LRPRPPVVTV MGHVDHGKTR LLDTIRQTKV GEAEAGGITQ HIGAYQVKTE VDGEERLITF IDTPGHEAFT AMRARGAQAT DIAVIVVAAD DGVMPQTVEA INHAQAAKAP IVVAVNKIDV SGANPAKVRQ QLTEYGLVAE EYGGDTMFVD ISAKQGTNID GLLEAIVLTA DAALDLRANP DMEAQGVAIE AHLDRGRGPV ATVLVQRGTL RVGDSVVAGD AYGRVRRMVD EYNRDVTEAK PSRPVQVIGF TSVPRAGDTF LVVEEDRVAR QIAERRQARI RNAENAARRK RVSLEDLDSA LKETNTLNLI IKGDNSGTVE ALESSLMQID VGDEVELNIV HRGVGGVTES DIDLATASDA VVIGYNVRAQ GKATERATRE GVDVRYYTVI YQAIEEIEQA LKGMLKPVYE EVDLGRAEVR EVFKSSKVGT IAGCLVTSGE IRRNSKARLL RDGVVVGENL PVSSLRRFKD DVVEVREGFE CGLTLGKFSD IKVGDVIETY ELREKPRE
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