| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_3848 |
|---|
| Symbol | |
|---|
| ID | 5060326 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | + |
|---|
| Start bp | 4407857 |
|---|
| End bp | 4409119 |
|---|
| Gene Length | 1263 bp |
|---|
| Protein Length | 420 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 640476105 |
|---|
| Product | inner-membrane translocator |
|---|
| Protein accession | YP_001160656 |
|---|
| Protein GI | 145596359 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG4214] ABC-type xylose transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCAGCA CCGCCCTCCC CGACCAGGAA TCCACGGCCG CCCCCGCCGC CGGACCCACC
CTCACCAGCC ACGTGCGCGG CTACCTCGGC CGGGTACGCG GCGGGGACAT CGGCGCCCTA
CCCGCCGTCC TGGGCCTGAT CGTGCTCTGC ACCGTCTTCG CGATCATGCG GCCGTCGTTC
CTCACCGCCG CCAACTTCGC CAACCTGTTC ACCCAGGGGG CAGCGGTCAC GCTGATCGCC
ATGGGGTTGG TCTTCGTCCT GCTGCTCGGA GAGATCGATC TCTCCGCCGG CTTCGCCAGC
GGGGTCTGTG CCGCGGTGCT GGCCAACGTG GTCACCGTCC TCGGCTACCC GTGGTACGTC
GCGGTGCTCG CCGCCGTCCT CACCGGAGTG GTGATCGGCA GCACGCTCGG CATGTTGGTC
GCGAAGATCG GCATTCCGTC CTTCGTGGTC ACCCTCGCCG GCTTTCTCGC CTTCCAGGGC
ATCGTGCTAC TGCTGATGGA GGAGGGCAGG AACATCTCGG TCCGCGACCC GGTGCTGGTG
GCGATCGCGA ACCGAAACCT GCCACCGGCT CTCGGCTGGG CCCTGGCCGG GCTCGCCGTC
GCCGGCTACG CCGTGGTCCA GGCGATGCGG TACCGCACCC GCGCGATCCG GGGTCTGGTC
ACCGACCCGC TCACCGTGGT CTTCGCCCGG GTCATCGGGC TGGCCGCCGT GCTGGGCGCT
ACGGTCTACC TCCTCAACCA GGAACGCAGC TTCAACGTCC TGATCAATTC ACTCAAGGGC
GTACCGATCG TGGTGCCGCT GATCGCGGTA CTGCTGATCA CCGGGACCTT CGTGCTGCAG
CGCACCAGCT ACGGCCGGCA CATCTACGCA GTCGGCGGCA ACAAGGAAGC AGCCCGGCGG
GCCGGCATCA ACGTCGACCG GATCCGCATC TCCGTCTTCG TGATCTGCTC CTCGATGGCC
GCGATCGGCG GCATCGTCGC CGCCAGCCGG GCCAACTCGG TCGACCCGAA CACCGGTGGC
AGTAACGTAC TGCTCTACGC CGTCGGTGCG GCGGTGATCG GTGGCACCAG CCTCTTCGGT
GGCAAGGGCC GGGTCCTCGA CGCGGTGCTC GGTGGCGCGG TCGTCGCGGT GATCGACAAC
GGGATGGGTC TGATGGGCTA CAGCTCAGGG GTCAAGTACG TGGTAACCGG CGTGGTCCTA
CTCCTCGCCG CCAGTGTGGA CGCACTGTCC CGGCGCCGGG CCGCCGCCAA CGGCGGCCGA
TGA
|
|---|
| Protein sequence | MTSTALPDQE STAAPAAGPT LTSHVRGYLG RVRGGDIGAL PAVLGLIVLC TVFAIMRPSF
LTAANFANLF TQGAAVTLIA MGLVFVLLLG EIDLSAGFAS GVCAAVLANV VTVLGYPWYV
AVLAAVLTGV VIGSTLGMLV AKIGIPSFVV TLAGFLAFQG IVLLLMEEGR NISVRDPVLV
AIANRNLPPA LGWALAGLAV AGYAVVQAMR YRTRAIRGLV TDPLTVVFAR VIGLAAVLGA
TVYLLNQERS FNVLINSLKG VPIVVPLIAV LLITGTFVLQ RTSYGRHIYA VGGNKEAARR
AGINVDRIRI SVFVICSSMA AIGGIVAASR ANSVDPNTGG SNVLLYAVGA AVIGGTSLFG
GKGRVLDAVL GGAVVAVIDN GMGLMGYSSG VKYVVTGVVL LLAASVDALS RRRAAANGGR
|
|---|
| |