Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Strop_2005 |
Symbol | |
ID | 5058468 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Salinispora tropica CNB-440 |
Kingdom | Bacteria |
Replicon accession | NC_009380 |
Strand | - |
Start bp | 2275354 |
End bp | 2276490 |
Gene Length | 1137 bp |
Protein Length | 378 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 640474271 |
Product | ABC transporter related |
Protein accession | YP_001158837 |
Protein GI | 145594540 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG3842] ABC-type spermidine/putrescine transport systems, ATPase components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 0.833855 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.0467613 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCGAGT CGCCGGCGGT CCAGTTCGAC CGCGTCAGCG TCCGCTACGG GCAGGTCACG GCGCTGCGGG ACTTCTCGCT CGACGTAGCC GCCGGCGAGA CGGTGGCCTT GCTCGGCCCC TCCGGGTCGG GCAAGTCAAC CGCCCTAAAA GCGCTGGCCG GATTCGTCCG GCCGACAGCT GGCCGGGTTC TGCTCAACGG CCAGGACGTC ACCGGGGCGC CACCGCACAA GCGTGGGCTC GGCGTCGTGG TGCAGCAGTA CGCCCTCTTC CCGCACCTCA CCGTCGCCGA CAACATCGCG TTCGGCCTGC GTGCCCGGCG GGTGCGACGC GCCGATTCAG CCCGACGTGT CGAGGAGATG CTTGACCTGG TCGGCATGGA CCACTACGGC CGCCGCTATC CGCGGGAGCT CTCCGGCGGG CAGCAACAGC GGGTGGCGAT CGCCCGCGCG TTGGCGATCC GGCCGCCGGT GCTGCTGCTC GACGAGCCGC TGTCCGCCCT CGACGCACAG CTGCGCGCCG ACATGCTCGA CGAACTGCGT CAGCTTCGAG ACGAGCTTCC GGACGTCGCG ATGCTCTACG TCACCCACGA CCAGACCGAA GCGCTCACCC TGGCACACCG GATCGCCGTC ATGCGCGAGG CCGAACTGCT CGACCTGGAC ACCGCCCAGG GCCTCTACCG GCAGCCACCG AGCGAGTTCA CCGCCGCCTT CCTGGGTGGG GCGAACCTGC TGCCAGCCAT CGTGCGTGAA GTCAACGGCA CGGTTGAGGT AGGCACGGTC ACCCTCACCG CCACCGCCCC CGGGCCACTC ACTCCCGGCA CCCGCGTGCG GCTCGCGGTG CGGCCACACA CCATCGGGGT ACGCACCGAC GGGCCCGGCC TCGCAGCCAT CCTCACCGGC CTGCAGTGGC GGGGTGCAAG CTACCGGTTA ACCTGCATGA TCGACGGGCT CGACGAGCCC GGCGGACTCA GCGTGCACGC CGACGTGCCC AGCATCGACG GGCTCCCGCA GGTCGGTTCC CCGGTACGGG TCCGGTTACC GGAGCATGGC GCAGCGGTGG TGGCGAAGAC GGGCGCGGGC ACCCCCACCG AGGGCGCCAC CGACGTCGTT CCGCAGGGTC TGGCAGGTGT GGCATGA
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Protein sequence | MSESPAVQFD RVSVRYGQVT ALRDFSLDVA AGETVALLGP SGSGKSTALK ALAGFVRPTA GRVLLNGQDV TGAPPHKRGL GVVVQQYALF PHLTVADNIA FGLRARRVRR ADSARRVEEM LDLVGMDHYG RRYPRELSGG QQQRVAIARA LAIRPPVLLL DEPLSALDAQ LRADMLDELR QLRDELPDVA MLYVTHDQTE ALTLAHRIAV MREAELLDLD TAQGLYRQPP SEFTAAFLGG ANLLPAIVRE VNGTVEVGTV TLTATAPGPL TPGTRVRLAV RPHTIGVRTD GPGLAAILTG LQWRGASYRL TCMIDGLDEP GGLSVHADVP SIDGLPQVGS PVRVRLPEHG AAVVAKTGAG TPTEGATDVV PQGLAGVA
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