| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Strop_1139 |
|---|
| Symbol | |
|---|
| ID | 5057589 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Salinispora tropica CNB-440 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009380 |
|---|
| Strand | + |
|---|
| Start bp | 1284504 |
|---|
| End bp | 1285232 |
|---|
| Gene Length | 729 bp |
|---|
| Protein Length | 242 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640473409 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001157988 |
|---|
| Protein GI | 145593691 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1478] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR01916] F420-0:gamma-glutamyl ligase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 0.840827 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCTG TCCCGACCTC CGGTTTCTCC GCTTTCGCGC TGGAACCTTT TCCCGAGCTC
CAGGCTGGTG TGGACCTGGC GGGCGCCATC ACCGGCGTCC TGGCCTGTAC GGGTATCGAG
TTGCAGGAGG GGGATGTGGT GGTGGTGGCT TCCAAGGCCG TGAGTGTGGC GGAGAAGCGG
TACGTGGATC TGGCCAGTGT CGTCGTTGGC CCGGAGGCGC TGGAGTTGTC CGCTCGCACG
GGCAAGCCCG CCGAGGTGGT GCAGCTGATC CTGGATTCCA GTGACAGCTA CTTCCTGGCC
ACCGAGAAGG GCCCGATCAT CGCGCGGCAC CGGCTCGGCT TCCAGCTCAC CTCCGCCGGG
ATTGACCGGG CCGGCCCGCA GGGTGCGTGG CTGTTGCCGG TGGATCCGGA CGCCTCCGCC
CGCGCCCTGC GCGACGCGTT GATCGCCCAT ACCGGCGCGG AGGTGGCGGT GGTGGTCGCG
GACTCCGACG GTCGTGCCGA CCGGCGTGGG GCGACTGTCA TCTCGATCGG CGCGGCGGGT
GTGGGGCCTT TGCGTGTGAC GGAGTACGGC GGTAAGCGGC AGGAAGAGAC TTTCACCGAC
CTGATCGCCG CGGCGGCCGG GATCATCCTC GGGCAGCGGG GTCGTGGGGC CCCGGTCGCC
GTCCTGCGTG GCGTCGCCTA CGAGAGCAGT GACGCGGGCG TGGCGTCGAT GCTTCAACGC
CGGCCGTGA
|
|---|
| Protein sequence | MTAVPTSGFS AFALEPFPEL QAGVDLAGAI TGVLACTGIE LQEGDVVVVA SKAVSVAEKR
YVDLASVVVG PEALELSART GKPAEVVQLI LDSSDSYFLA TEKGPIIARH RLGFQLTSAG
IDRAGPQGAW LLPVDPDASA RALRDALIAH TGAEVAVVVA DSDGRADRRG ATVISIGAAG
VGPLRVTEYG GKRQEETFTD LIAAAAGIIL GQRGRGAPVA VLRGVAYESS DAGVASMLQR
RP
|
|---|
| |