Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_4451 |
Symbol | |
ID | 5613423 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 5438990 |
End bp | 5439538 |
Gene Length | 549 bp |
Protein Length | 182 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640935421 |
Product | outer membrane protein, putative |
Protein accession | YP_001476181 |
Protein GI | 157377581 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3637] Opacity protein and related surface antigens |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAACTCA ACTCTCTGTT AACCGCTGGC ATGTTACTGG CCGCGACGAC ACCCGCTCTT GCCGCCGAAG ACCTGGGCTT TTACCTCGGT GGCCAGGTTA ACCACACCAG TGTAGAAGAC AATATCGGTA CCTTAGATGA GTCTGCCATA GGGCTCGGCA TCTATGGTGG CTACAACTTC AATGACAGTT TTGGCATCGA GACGAGCATT TTTTTGACCG ATAGTCTCGT CGATGAGATG GATTTGAGAA TAGCGGCGGT GACCATCTCC CCCGTGATTC GACATGCCTT TACCGACAGT GTAACTGGCT ATTTGAAGGC GGGTCTGGTA GTCAACAAGA CCTACAGCAA CGATGACGGT GTTGACGAAG ATTATCGAGG CACAGGTTGG TTGTTCGGCG CCGGTGTGGA TGTGACCCTG ACAGAGTCTC TGGCGTTACG AGTGTCTTAT GAGATGAGTG AAACTGAGCC TGAATACAGC GAGCTGGAGA ACTATTACGC CGATATCAGC CTGAAACAAT TTGGCGTTGG TTTGCATTAC AGATTCTAG
|
Protein sequence | MKLNSLLTAG MLLAATTPAL AAEDLGFYLG GQVNHTSVED NIGTLDESAI GLGIYGGYNF NDSFGIETSI FLTDSLVDEM DLRIAAVTIS PVIRHAFTDS VTGYLKAGLV VNKTYSNDDG VDEDYRGTGW LFGAGVDVTL TESLALRVSY EMSETEPEYS ELENYYADIS LKQFGVGLHY RF
|
| |