Gene Ssed_4430 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_4430 
Symbol 
ID5611666 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp5414852 
End bp5415265 
Gene Length414 bp 
Protein Length137 aa 
Translation table11 
GC content47% 
IMG OID640935400 
Productflagellar basal body-associated protein FliL-like protein 
Protein accessionYP_001476160 
Protein GI157377560 
COG category[N] Cell motility 
COG ID[COG1580] Flagellar basal body-associated protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000303326 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGAAAATTC AAAAATTAGC ATCGCTACTG CTTATTTTAG TCGCGACCGT TTTCAGCTTT 
GGTGCTTATG CCGAAGACGG AGATATTGTA GATAACTACG CCTATTATGG CTTCGAACCC
GATCTCATCA CCAATTATAT CTCTACCGGT AAGAAGATGG GCTTTGTACG CATCGGTATC
GAGCTGATGG TGAAAGATCC CGACGACCTG ATCGCCCTCG AGCATCATGA TCCTCTGTTG
CGTGCCGCCA TTCTGGAGAT CATGGGAAGC CAGACCGCCG ATAAGGTTAA ATCACTGACC
GGACGCGAAG AGATCAGACG TGAATGCTAT GACACAGTCA ATCGTCTTAT CGAACGGGAA
ACCGGCAAGG CCATTATCGT CAACCTGCTT TTCACTAAGT ATCTCTACGA TTAG
 
Protein sequence
MKIQKLASLL LILVATVFSF GAYAEDGDIV DNYAYYGFEP DLITNYISTG KKMGFVRIGI 
ELMVKDPDDL IALEHHDPLL RAAILEIMGS QTADKVKSLT GREEIRRECY DTVNRLIERE
TGKAIIVNLL FTKYLYD