| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4411 |
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| Symbol | |
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| ID | 5610585 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 5390403 |
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| End bp | 5391860 |
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| Gene Length | 1458 bp |
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| Protein Length | 485 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640935381 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001476141 |
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| Protein GI | 157377541 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.244707 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGGTAAGA CAATTTGGAA TGATAAGAGA AAATTTGTCT GGATCCTTTC CGTTCTGCTC
TTTGGTGCTT TCATCGCGAC CAGCGGGATC AGTTATCAGG TTGCGCATAG CTCCCTGAGT
GCGCAAATTG AAGAAAATAC CTTACCCCTG ACCAGTGACA ATATCTATTC GGAAATTCAA
CAAGACCTGT TGCAACCCAT ATTCATCTCT TCTCTGATGG CACAAGATAC TTTTGTTCGT
GATTGGGCGA TTAATAAAGA GCAAGGTCCC GAGAAGCTGA TCCATTATCT TAGAGAAATT
CAAGACAAGT ACGATACCGT GACCAGCTTT TTCGTATCTG AAAAAACCAG AAATTACTAT
CACTCTTCAG GCGTCCTGAA ACAGATTAAA GATATTGATC CTGAAGATGC GTGGTATTTC
CGGGTTCGGT CACTCGCCAG CTCAGAACTT TACGAAATTA ATATAGGTCC CGGTTCCACT
GATGCCAAGC AGACTGTCGT GTATGTGAAT TATAAAGTCT TTGATTTTGA AGGCGGATTT
ATTGGTATTA CCGGGGTAGG TCTTGCAGTA GAGAGAGTGA GAACCTTGAT TGAGCGATAC
GAGAAACGGT ACAACAGGCA TGTCTATTTT GTCGATCGAG AGGGGCATAT AACCCTTCAT
GGTGAGGCAT TTTCCGGGGG GAAGACAATA CAGGATACAG AGGGGGTGGA TAAGTTAGCG
ACACGAATTT TGACCAGTCC GAGTGCGTCA CTGACCTATA TGAGGGATGG TAAAACGGTC
TATCTCAATA GCCGTTTCGT CCCTGAGTTT AAATGGTACC TGATGGTTGA ACAGGAGGAG
GTCGATAGTG AGAAGAAATT ATTAACCACC TTTTGGGCGA ATCTTGCCAT CAGCTTTATT
GTGACTATCG GTATTTTAAT GGTCGCAAAC TTAACCTTGG GGCGTTACCA GAGAAAACTG
GAGTTTATGG CTTCGACAGA TAAACTGACG GGGGTTGCCA ATCGGCAAAT ATTCGAAGAG
TATTTTGCAA AGGCGATGGC CGAGGCCGAT GAGAGCGAGA CTCCGGTTTC AATTATATTG
CTCGATATCG ATCTCTTTAA GAGGGTGAAT GACACTTATG GCCACAACAT AGGTGACTTG
GTGATTAAAA CGGTGAGCAG CGTATTGAAA AACCAGCTAA GAGAGAAGGA TGTGGTTTGT
CGCTGGGGAG GAGAAGAGTT TCTGCTTTTG CTACCCAACC TGGAGTTAAG CCACGCCGTC
GACGTCGCTG AGCGGATCCG GGGAAAGATT GCCAAGCGAA AGATCAGAGT CAATGAGCAT
GAGATCTGTG TGACTGTGAG TTCGGGCGTT GCGGAATATA ATCACACCGA AAAACCCAAT
GAGTTGATAA ATCGTGCCGA TGTTGCTCTT TACCAGGCAA AAGAGTTGGG ACGTGATCAG
GTGGTTCTCT CCCATTGA
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| Protein sequence | MGKTIWNDKR KFVWILSVLL FGAFIATSGI SYQVAHSSLS AQIEENTLPL TSDNIYSEIQ
QDLLQPIFIS SLMAQDTFVR DWAINKEQGP EKLIHYLREI QDKYDTVTSF FVSEKTRNYY
HSSGVLKQIK DIDPEDAWYF RVRSLASSEL YEINIGPGST DAKQTVVYVN YKVFDFEGGF
IGITGVGLAV ERVRTLIERY EKRYNRHVYF VDREGHITLH GEAFSGGKTI QDTEGVDKLA
TRILTSPSAS LTYMRDGKTV YLNSRFVPEF KWYLMVEQEE VDSEKKLLTT FWANLAISFI
VTIGILMVAN LTLGRYQRKL EFMASTDKLT GVANRQIFEE YFAKAMAEAD ESETPVSIIL
LDIDLFKRVN DTYGHNIGDL VIKTVSSVLK NQLREKDVVC RWGGEEFLLL LPNLELSHAV
DVAERIRGKI AKRKIRVNEH EICVTVSSGV AEYNHTEKPN ELINRADVAL YQAKELGRDQ
VVLSH
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