Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_4197 |
Symbol | |
ID | 5611943 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 5154970 |
End bp | 5155845 |
Gene Length | 876 bp |
Protein Length | 291 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 640935156 |
Product | hypothetical protein |
Protein accession | YP_001475929 |
Protein GI | 157377329 |
COG category | [S] Function unknown |
COG ID | [COG5373] Predicted membrane protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.495069 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAATATA TAGCCATTAT TTTGCTAGTT GCTTTAGGGG TTTATCTATA TAAACGAGCT CAGCGACTGG CCGAAGAGGA ACTGCAACAG GATTTGAATA CTCCTGTTGA AAAAGAGATT TTCGACAGCG CTTCAGCCGA AGATATTCAG GATGAGAGCC ATGCCTTTTC TGAGGACGCG GCTAAGGCGG AAAAGGTTGA AGTTGCCGAG GTGGAGGAAG TCTCCACTCC GGCAGACGAG GGGATCAGCT TCGAGACTAA AGAAGCGACT AAGGTACAGG CTGAGGTTGT AAAGAGTGAA CCTGAGGCCG ATACTCCTGC AGAGCCAGAG CCAGAGCCAG AGCCAGAGCC AGAGCCAGAG CCAGAGCCAG AGCCAGAGCC AGAGCCAGAG CCAGAGCCAG AGCCAGAGCC AGAGCCAGAG CCAGAGCCAG AGCCAGAGCC AGAGCCAGAG CCAGAGCCAG AGCCAGCCGT GGAGGAAACT CCTGTGGTTG CCACAGATGA ATCTTGGGCG AATGCTAAGT TATCTCAAGC CCTGTCAGAT TATCGAGGCT CTACCGGGAA AGCTGTTAAA CATCAGGCTT TATTGGGGGC GATTGCTGAA TGTTATAAGC AACGCAAACA ACCTGAGTAC AGCGCATATG GGGCGGGATT AACGGCCGAA TACCTATCGG TATTTGCAGA ACTCGAATCA CCATCTTCGG AGAAGGGGGT GGGCTTCATG CATCTATCTA CACTTCTCAA TGATAATGGC CGGTTCGACA GTGCCATTGG CGTTTGCCTG AAGGCGATCG AATATGGTGT GCTCGACGGT ACCGTTACCG GTTTCGAAGG GCGAATAATC CGAATAGAAA AGGCCAAGGC CAAAGCGGCG AAGTAA
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Protein sequence | MKYIAIILLV ALGVYLYKRA QRLAEEELQQ DLNTPVEKEI FDSASAEDIQ DESHAFSEDA AKAEKVEVAE VEEVSTPADE GISFETKEAT KVQAEVVKSE PEADTPAEPE PEPEPEPEPE PEPEPEPEPE PEPEPEPEPE PEPEPEPEPE PEPEPAVEET PVVATDESWA NAKLSQALSD YRGSTGKAVK HQALLGAIAE CYKQRKQPEY SAYGAGLTAE YLSVFAELES PSSEKGVGFM HLSTLLNDNG RFDSAIGVCL KAIEYGVLDG TVTGFEGRII RIEKAKAKAA K
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