Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_4036 |
Symbol | |
ID | 5612710 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 4944704 |
End bp | 4945534 |
Gene Length | 831 bp |
Protein Length | 276 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640934991 |
Product | hypothetical protein |
Protein accession | YP_001475768 |
Protein GI | 157377168 |
COG category | [S] Function unknown |
COG ID | [COG2120] Uncharacterized proteins, LmbE homologs |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 0.489025 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGCCAAA GGATTCGGTT GACTCTGATA CTTCTCATGC TTGCTATAAG CGTAACAGGC TGTCACCTCG AGAATGGAAG AGAGCAATTC GATGGATCAT ATAGTATGGA ACCAGTGGAA GAGATGGCGG GGGATCTCTC TGTCGTCGTT ATTTTTGCTC ATCCGGATGA TGAGACCTGG ATATCTGGAA CGTTAGCAAA ATTGAGTGAT CATGGCGTAA AAGTCTTTCC GGTATACGCG ACTTCCGGAG ATGCCGGGAG TGATCATTCC GGGCAAGGGT TATCGGGCTC TGAGTTAGCG CTGATTCGAG AGCAGGAAGC TATTGCAGCC TCTCAAATAT TAGGCCTTCA GTCTCCGATA TTTTTGCGCT TACCTGATGG CAAGCTCAAT AAATATTCTG AAGAGATTAT CAAGCAGCTG AACAGCATAC TCGAACAGGA AAAGCCTACC GCTATTCTCA CATTTGTGGA GGGGGGAATA ACGGATAATC GAGACCACAA AACGTTGAAT AGATTAGTTT CAGCCCATTT CAATCGGCTT GCTGGTTACT TTGGTGTCTC CTATTACAGG GCGGAAAGCC TGGCTAAATC GGCCAATAAG TTTGGCTTCG ATTACAAGGT TGCTATGCCC ATCGAGGACG CAGGTGTCAC GATTCGAGTC GATGTTTCAT CCTATAAAAC TAAAAGGGTG AAGGCGATGG CAAGCCATAA GACTCAATTC CCTTCCATTA TGATCAAAGC CTATACTGAT TATGCCGAGT CTGTTCCCCT GGAGGAGATC ATTACCATTA ATGGGGGGAG CTGCTCTGTT CTGATAAGGC TGTTAGAGTG A
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Protein sequence | MGQRIRLTLI LLMLAISVTG CHLENGREQF DGSYSMEPVE EMAGDLSVVV IFAHPDDETW ISGTLAKLSD HGVKVFPVYA TSGDAGSDHS GQGLSGSELA LIREQEAIAA SQILGLQSPI FLRLPDGKLN KYSEEIIKQL NSILEQEKPT AILTFVEGGI TDNRDHKTLN RLVSAHFNRL AGYFGVSYYR AESLAKSANK FGFDYKVAMP IEDAGVTIRV DVSSYKTKRV KAMASHKTQF PSIMIKAYTD YAESVPLEEI ITINGGSCSV LIRLLE
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