| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_4006 |
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| Symbol | |
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| ID | 5610428 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4904336 |
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| End bp | 4905565 |
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| Gene Length | 1230 bp |
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| Protein Length | 409 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640934961 |
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| Product | peptidase T |
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| Protein accession | YP_001475738 |
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| Protein GI | 157377138 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2195] Di- and tripeptidases |
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| TIGRFAM ID | [TIGR01882] peptidase T |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00000311965 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGACAAG CACTGTTAGA ACGTTTCCTG CGTTATATTA AGATTGATAC TCAGTCTGAT
GGTAAAAATC TTGAGTCCCC TAGTACTCCA TCGCAATTTG AATTTGCAAA GCTGCTAAAG
CTGGAGCTCG AAGAGTTAGG ATTCCATAGA GTTGAACTCT CCGATAAGGG CTACTTGTCT
GCGAGTGTAC CTAAAACCAT CGAGGGTGTT CCCTGTATAG GATTTATCGC ACATCTGGAT
ACCGCTCCGG ATTTCAGTGG CGCGAATGTG ACTCCTCAGC TGATCAATGA TTATGACGGC
AGTGAGATCA AACTGGGCGA AGATGAAGTA TTGAGTCCCG AGTTGTTTCC CCACATGCTT
AAATACTTAG GTAAAACCTT AATCACTACC GATGGTACGA GCTTGTTAGG TGGCGATGAT
AAGGCGGGCA TATCTGAAAT AATTACGGCA TTACATTACC TTCTGGAACA CCCGGAGATC
CCACACGGAG AGATACGCCT ATGCTTCACT CCCGATGAGG AGATAGGACG AGGCGCGGAT
CATTTTGATG TTCCGGAATT CGGTGCACAG TGGGCCTATA CCATAGATGG TGGCCAGCTA
GGTGAGCTTG AATTTGAAAA TTTCAATGCC GCAACGGCGG TGATCACTGC AAAAGGTAAC
AATTGCCACC CGGGAACGGC CTATGGTGTG ATGGTGAATG CCCAAACTAT GGCCGCTCGC
TTCCATGCCA AGATGCCACT GCATGATACG CCAGAGGGCA GTAAAGACTA TGATGGTTTT
TTCCACCTAA TCAATATGCA GGGGCAAACC GAAGAAGCCG AGCTTACCTA TATAATTCGG
GATTTCGATC TGGAACTATT TGAAAAAAGA AAGACTTGGT TAACGGAGCG CGTCAAGAGC
TACAATGCCG ATCTTGTTCT TGGTAGCTTA GAGATCGAGA TAACCGATAG TTATTTTAAT
ATGAAGGAAC AGATCTTACC TTATCCACAT ATTATCGATA TTGCTGAAAA AGCCATAACT
AATCAGGGTG TTACTCCGTT GATTAAGCCT ATTAGAGGCG GTACCGATGG TTCAAGGCTC
TCCTATATGG GATTACCTTG CCCCAATATC TTTACCGGCG GACACAATTT CCATGGTAAA
CACGAATATA TCTGCCTCGA GTCAATGGAG AAGGCCGTAG ACGTGATCAT CGATATCTGT
AAGCTTACCG CCGAAGAGCA ACAAGCCTAG
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| Protein sequence | MRQALLERFL RYIKIDTQSD GKNLESPSTP SQFEFAKLLK LELEELGFHR VELSDKGYLS
ASVPKTIEGV PCIGFIAHLD TAPDFSGANV TPQLINDYDG SEIKLGEDEV LSPELFPHML
KYLGKTLITT DGTSLLGGDD KAGISEIITA LHYLLEHPEI PHGEIRLCFT PDEEIGRGAD
HFDVPEFGAQ WAYTIDGGQL GELEFENFNA ATAVITAKGN NCHPGTAYGV MVNAQTMAAR
FHAKMPLHDT PEGSKDYDGF FHLINMQGQT EEAELTYIIR DFDLELFEKR KTWLTERVKS
YNADLVLGSL EIEITDSYFN MKEQILPYPH IIDIAEKAIT NQGVTPLIKP IRGGTDGSRL
SYMGLPCPNI FTGGHNFHGK HEYICLESME KAVDVIIDIC KLTAEEQQA
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