| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3992 |
|---|
| Symbol | |
|---|
| ID | 5610462 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 4885570 |
|---|
| End bp | 4886670 |
|---|
| Gene Length | 1101 bp |
|---|
| Protein Length | 366 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640934946 |
|---|
| Product | RND efflux system membrane fusion protein |
|---|
| Protein accession | YP_001475724 |
|---|
| Protein GI | 157377124 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTGACG TAAAAAGCCA CAAATTGCTA TTAGCTTTAA TGAGCTCTTC GATACTGTTT
GGCTGCAAAG TACAACAAGA GACGGCAGGC GAAGAGACTA GCCTCATCAG ACCTGCAAAG
GTCATTACTG TTGAGACTGT TAACCCAAAT AGCGTAAGAC GCTTTTCCGC TGTTGTTGGT
GCGGAGCAGA GTACCGAGCT TGCATTTCGA GTCAATGGAC AGGTCGAATT TCTGGATGTT
GTAGAGGGTC AGAGAATAAA AAAAGGCGAG CTAATTGCTT CTCTTGATGA TACTGATTTT
GAAATTTTAC TCGACGATGC CTCAGCCAAA TACGATCTCG CATTTGCCCA ATATAAGCGA
ATTCAGTTAC TAACAGATAA AGGCTTAGCA TCTAAATCTG AATCAGATAC ATTGCTGGCT
GAAATGTTGG TTGCAAAAGC TAACTTAGAA CAAGCAAATC AGAATCTTAA ATACACAGAG
TTGCGAGCGC CATTTGACGG TATCATTGCG CAGAATCATG TAGAGCAGCA TGACCACATC
GCCGTCGCTC AGCCTATTTT TTCATTCCAA AACGAGTCGT TACAGGAGGT GAGCTTTGAC
CTACCTGAAA AATTAGTCGA GCGCTTTAAC CCTCAAGAAC TCGTCAATTT CAATGCCAAA
GTGGTGTTAG ATGCCTATCC GAATACTGAG ATAGATGCTC AGTTTAAAGA GATGCAAAAA
CACAGTAGTC ATGGCGCACT CAGCTATCGC GTTACCTTTT CAATGTTATC ACCCGATTCC
TTGCGCATCC TCCCCGGCAT GAGTGCCGAT CTGTCACTGA GTTTGGCACA AAATGCTCGC
CAAACCGAGC TGGTAAAAGT GCCACTAGCC GCTGTTTTTA GTGATGAAAA AGTCGCACTT
GATGAGTCGA AGTCATTTGT TTGGCTGGTG AATGATAATA ATCAAGCTGC GCAGCGAGAG
GTCGTGCTTA GTCGCATCGA GCAAGACGGA GCCGTTATTG CGGGCGGATT AAAAGTGGGT
GAGCGCATTA TTGCCGCCGC GCCGACTCGC TTGTCAGAGG GGCAAGAGAT CAAGCCAATG
GCACGTGAGC GGGGCCTGTA A
|
|---|
| Protein sequence | MIDVKSHKLL LALMSSSILF GCKVQQETAG EETSLIRPAK VITVETVNPN SVRRFSAVVG
AEQSTELAFR VNGQVEFLDV VEGQRIKKGE LIASLDDTDF EILLDDASAK YDLAFAQYKR
IQLLTDKGLA SKSESDTLLA EMLVAKANLE QANQNLKYTE LRAPFDGIIA QNHVEQHDHI
AVAQPIFSFQ NESLQEVSFD LPEKLVERFN PQELVNFNAK VVLDAYPNTE IDAQFKEMQK
HSSHGALSYR VTFSMLSPDS LRILPGMSAD LSLSLAQNAR QTELVKVPLA AVFSDEKVAL
DESKSFVWLV NDNNQAAQRE VVLSRIEQDG AVIAGGLKVG ERIIAAAPTR LSEGQEIKPM
ARERGL
|
|---|
| |