| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3857 |
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| Symbol | |
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| ID | 5611649 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4706382 |
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| End bp | 4707263 |
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| Gene Length | 882 bp |
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| Protein Length | 293 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 640934811 |
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| Product | AraC family transcriptional regulator |
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| Protein accession | YP_001475589 |
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| Protein GI | 157376989 |
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| COG category | [K] Transcription |
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| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.906339 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATAAAT TTACTGATAT ACCAGACATT AAATATCGGG CTCCGAGCAT CGAGAAGTCC
GGAATAGAGG TTTTAGATCT AGACAAGTTC TACAAGAAAC TACCAAAGTA TGATCATGAC
CCCTCAAAGC CCCACAGGCT TCATTACTTC TGCTTTATCT ATATTACCCA GGGGGAAGGC
AGCCACTTCA TCGATTGTAA TTACTACCCA TTCAGGAAAG GTAGCTTCAT CGCTGTGAAC
AAAAATCAAA TACAAGCATT CGATCTAATA AATCGGCCCA AAGGGAAAAT GATAAATGTC
ACGGAGAAGT TTTTTGATGA AATTCGAGCC AATATCAGAA TGCCGCTCTT CACTCCTACT
CATCTGGCGA CTGCACATTC TCCCGTTTTT ATTATGGACC AATCGACTAA AGAGAGCTGT
GATCTTTTTT TAGAGGAGAT CGATAAGGCG CAGGCAAGCG AGCATTGTGA CAACTTACTC
CTTCAGCTTG TTTTTTCTTC GCTATTGCTA AAGTTAAGCC AGAAAAGAAC GAGTCATATC
GAGCTGTTAA ACGAGGTGCA GGCCCATAGA TTCAGTCAGT TTATATCACT GATTGAGGAG
AAGTTCACTA TCACCAGAGA TGCATTGGCT TACGCCGATA TGATACATAT CTCGTACAAA
TATCTGAATC AGATCTGTAA GCTGGCATGC AACCAAACCG CCAAACAACT GATTGATGCG
CACATCATTC TGGAAATAAA ACGCAGGCTC ACCATAGATA ACTCTCAGGT GCAGCAGATA
GCCTATGATC TGGGCTTTGA TGATGTCACT TACTTCGTAA AATATTTCAA AAGACACACC
CTTCTCACAC CATCTCAATT CAAAGAGGTC TCAAAGGGCT AA
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| Protein sequence | MDKFTDIPDI KYRAPSIEKS GIEVLDLDKF YKKLPKYDHD PSKPHRLHYF CFIYITQGEG
SHFIDCNYYP FRKGSFIAVN KNQIQAFDLI NRPKGKMINV TEKFFDEIRA NIRMPLFTPT
HLATAHSPVF IMDQSTKESC DLFLEEIDKA QASEHCDNLL LQLVFSSLLL KLSQKRTSHI
ELLNEVQAHR FSQFISLIEE KFTITRDALA YADMIHISYK YLNQICKLAC NQTAKQLIDA
HIILEIKRRL TIDNSQVQQI AYDLGFDDVT YFVKYFKRHT LLTPSQFKEV SKG
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