| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3794 |
|---|
| Symbol | |
|---|
| ID | 5612075 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 4624607 |
|---|
| End bp | 4625467 |
|---|
| Gene Length | 861 bp |
|---|
| Protein Length | 286 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640934748 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001475526 |
|---|
| Protein GI | 157376926 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1262] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0000288368 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.764365 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGGTT TGAAATTATC TCACTTACCA CTGCCAGGGT TATCGCGATT AATCGTGTCG
CAATTAAGCC TGCTCCCACT CTTAATGAGT TCATCGGTTT TAGCCGATTC AACTCAGCTG
AAAGTGGGGG TGTTGGTGCC AGAATCTTCA TTTCAGATGG GGTGTTCAGT CAAAGATAGT
GACTGTGAGT CCGACGAGGG AAAACCCGGT GGAGTATCCG TTTTTGTGCC TGCATTTTAC
ATCGATACTC ATGAGGTAAT GGTCAGTGAA TATCAAGCCT GTCTGGATGC GGGGAAGTGC
CAAAGACCTA AAGATCATGA CCGTAATCAA TACTGTAACT TAGGGGCTAA GGGGCGGGAT
CATCACCCTA TCAATTGCGT CGATTGGTCG CAGGCACAGG CTTTTTGCCA ATGGCGAGGC
CAGCGTCTGC CTTATGAGGC GGAGTGGGAG AAGGCGGCTC GTGCATCGAG TTTAACGCGA
TATCCCTGGG GAGATGCCGT TAGCTGCAAG CAAGCTATTT TGGACGACGG TAAAACCATG
GGCTCCGTAG CTGGAGAACC CGATGGTTGT GGGGAGGACC GTACCTGGCC GATAGGCTCA
AGATCTGCCA ATGCACTGGG CCTATTCGAT ATGCATGGCA ATGTCGGAGA GTGGACCATG
AACTGGTATG CGAAAGATGG TATCGCACAA TATGTTCAAG GGAACCTTAC GGATCAGAAA
CCCACCCCCC GTAAGGTTGT AAGGGGCGGC TCATGGGATG AGACGGCACT TAACCTGCGC
AGCTCTTTTC GTAATATCAA AGCGCCAATC AGTGGTGATA GCATCTATGG TTCCATTGGC
TTCAGGTGCG CCAATGACTA A
|
|---|
| Protein sequence | MSGLKLSHLP LPGLSRLIVS QLSLLPLLMS SSVLADSTQL KVGVLVPESS FQMGCSVKDS
DCESDEGKPG GVSVFVPAFY IDTHEVMVSE YQACLDAGKC QRPKDHDRNQ YCNLGAKGRD
HHPINCVDWS QAQAFCQWRG QRLPYEAEWE KAARASSLTR YPWGDAVSCK QAILDDGKTM
GSVAGEPDGC GEDRTWPIGS RSANALGLFD MHGNVGEWTM NWYAKDGIAQ YVQGNLTDQK
PTPRKVVRGG SWDETALNLR SSFRNIKAPI SGDSIYGSIG FRCAND
|
|---|
| |