| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3760 |
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| Symbol | |
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| ID | 5612659 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 4583252 |
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| End bp | 4583989 |
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| Gene Length | 738 bp |
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| Protein Length | 245 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640934714 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001475492 |
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| Protein GI | 157376892 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000000882813 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 57 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGAAGT CGATATTGTG TTTGGGAAGC TTAGGTTTAG CTGGCGTGTT GATGTTAACC
GGATGCGGTA AGAGTGATGA TGTGCTTGTA GTGGGCACTA ACGCGTCGTT TCCTCCTTTT
GAATATGTCG GAGGGGTTAG CGGTGATGAG ATCAAAGGCT TCGATATCGA TTTAGCTCGC
CAGATCGCCA AGGATGCGGG GAAGACACTT AAAGTTGAAA ACATGAAGTT TGATTCACTC
ATCGTGGCGC TTAATGCGGG CAAGGTTGAC CTGATCGCCT CCGGCATGAC GATCACTGCG
GAGCGTCAGG CGAGCGTTAA CTTTTCCGAT CCCTACTACG AAGCGACGCA GGTGGTGCTG
GTCAACAGAG ATAACACCAG CATAAAGAGT GTCGATGACC TTAAGGGTAA ACATATCGCG
GTACAGCTGG GTTCCACCGG CGATATCATG GCCAAGAGTT ACAGCCAAGA GGTCACCGCC
TTCAACACAG GTTTTGAGGC CATCATGGAG CTTAAAAACG CTAAGGTCGA TCTGGTGCTG
TTTGACAGTG AACCTGCGGC CAGCTTTCTG GATAAGAATC CCGGGCTTAA GATGGTTGAA
CTGGATTTCG ACCCCGAGTT TTATGGATTT GCGGTCACCA AAGAGAAAGT TGAATTGCTG
CACAGCATCA ACAGCACCCT GACGACCATG AAGCACAACG GCGAGTATGA CGCCCTTGTC
GCCAAGCATA TGAAGTGA
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| Protein sequence | MKKSILCLGS LGLAGVLMLT GCGKSDDVLV VGTNASFPPF EYVGGVSGDE IKGFDIDLAR
QIAKDAGKTL KVENMKFDSL IVALNAGKVD LIASGMTITA ERQASVNFSD PYYEATQVVL
VNRDNTSIKS VDDLKGKHIA VQLGSTGDIM AKSYSQEVTA FNTGFEAIME LKNAKVDLVL
FDSEPAASFL DKNPGLKMVE LDFDPEFYGF AVTKEKVELL HSINSTLTTM KHNGEYDALV
AKHMK
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