| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3626 |
|---|
| Symbol | |
|---|
| ID | 5612227 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 4414495 |
|---|
| End bp | 4416225 |
|---|
| Gene Length | 1731 bp |
|---|
| Protein Length | 576 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640934579 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001475358 |
|---|
| Protein GI | 157376758 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00173227 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.0443221 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGGTTTA AATTTATTCT TTCGATGCTG TTAGCGACCC TCTCAGTGGT CGCTAATGCA
CAAACCGATG AGCAAGTGGT TACCATCTAC TTCGCTGGTA CAAATATGAC TCAGGAGTAT
TGGAATGAAG CTCAACTTCT TCATCCATTC TCTGAGCCGG AAACGATTGC GACCCTGTAT
AAACAGCAGG TCGATGGTGG CAATCATCAT AAGAAAATCC TTGATGGTTT TGCATGGCTG
GAAGCCGCAC TGCCTGATTG GGACGGTAAG TTTTCAGAAG CTGAAGGGAA GCTGGAAGAG
GTGATCGATA ATTTTCCTCA GGAGGTGTCA GATTCATGTG ACTTGACCCC TTGCATCATA
CTTAATTTAG TGGGATTCAG CCGAGGCGGG GCTTCGACTC TGCATTTCGC CCACACAATC
TCGAATAATG CGGATCACGC TAATTTGAAA AGTAAGATCA AAAAAATCAA CATATTGAAC
TTCGACCCGG TTCCCGGAGA TGCGTTTATG CCCGCAGAGG TATTCAATCT CCCTGAGAAT
GTGGAATATC TTGGCTTCTA TTCAGTCGAT GAACGCACCC AGTTCTTCGC CCCGGTATTT
CCAACCCCTA CGGCGGCTCA TTATGACGCA TTTACCGTAC CGGGTAGCCA TGAAACTATG
GTCGGTAATA TCTATAGGGG CGGACACAGA GATCTGTTTG GTCTCAGTAA GGTAGAAGCC
ATACGCGTGG TTTCGATGGT GCTTAAGATC GTGGCGACCG AGGTTTTGGG CTCTTCCGAA
TGGGGGCACG TCAGATTTAA TGATGACCTG TCGCACACGG CGCGAGATTT GAGTTGGTAT
GACGAGGTGA CCGACACCGA TGGCGACGGC AACATAGGGA TCGGTGAACT TGAGAGCTAT
TTTACCGATA AGTTAACGTC TATCTATGCT GTGTTCGGTC CCGATCCCAC TTCAGCACTC
CCTCCGTATC CTGAACTTAT GCGTGCAGAA TCCTTCTTTC CTGTAATAAC GCGGGAATAT
TGGGGGACCC TGGTACCTGA GTGTTTCTTT GAACCTGTGA TTCCATTCCC GGACTTATTC
TTCTCTGTCA CCTCGCCGCG TTGCGTTTAC CATCGCCCCA CGGACTATGT TGGAGATCTC
GGCATTTCCG ATCGCAGTCT CGAAGAGATA GGAGATCCCG AAAATCCCCT GAATGCTCTG
GAGGGGAGTG ATTACAGGAT CTGGAATCTG CTGCTGGAGA GAGGTAGCCT GGATATCGAT
GAAGATATTG TCGATTACAG TGATGATAAC TGCCCGTTCG ACTTCAACCC GGAACAGCTT
AATACCGACG GCGATCTGTT AGGTGATCTC TGTGATTCCG ATATGGATGG AGATGGGATT
GAAAATGAGT CAGACAACTG TCCGCTTATC CCTAATACCG ATCAAGCCAA CTTTGATGAT
GATCTACTGG GTGATGTTTG CGATCTCGAT GCCGACAATG ATGAGGTTGT TGATGACTCA
GATCTGTGTC TGTTTACTCC GATGGGTGCC ATAGTGAACG CCAGCGGTTG CAGTATTGCT
CAACTCGTTC CCTGTGAGGG CCCAGAGGAG AGTACAGCCT GGAAGAACCA TGGCCAGTAT
GTGTCCCAAA CGGCGAAGGT GGCTAAAACC TTCCGTAAGC AGGAGTTGAT AAATCAGTGG
GAGTTTTTGG CTATCATGCA GGCTGCAGCG CAATCCGCTT GTGGTAAGTA A
|
|---|
| Protein sequence | MRFKFILSML LATLSVVANA QTDEQVVTIY FAGTNMTQEY WNEAQLLHPF SEPETIATLY
KQQVDGGNHH KKILDGFAWL EAALPDWDGK FSEAEGKLEE VIDNFPQEVS DSCDLTPCII
LNLVGFSRGG ASTLHFAHTI SNNADHANLK SKIKKINILN FDPVPGDAFM PAEVFNLPEN
VEYLGFYSVD ERTQFFAPVF PTPTAAHYDA FTVPGSHETM VGNIYRGGHR DLFGLSKVEA
IRVVSMVLKI VATEVLGSSE WGHVRFNDDL SHTARDLSWY DEVTDTDGDG NIGIGELESY
FTDKLTSIYA VFGPDPTSAL PPYPELMRAE SFFPVITREY WGTLVPECFF EPVIPFPDLF
FSVTSPRCVY HRPTDYVGDL GISDRSLEEI GDPENPLNAL EGSDYRIWNL LLERGSLDID
EDIVDYSDDN CPFDFNPEQL NTDGDLLGDL CDSDMDGDGI ENESDNCPLI PNTDQANFDD
DLLGDVCDLD ADNDEVVDDS DLCLFTPMGA IVNASGCSIA QLVPCEGPEE STAWKNHGQY
VSQTAKVAKT FRKQELINQW EFLAIMQAAA QSACGK
|
|---|
| |