| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3523 |
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| Symbol | |
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| ID | 5612142 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 4291541 |
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| End bp | 4292347 |
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| Gene Length | 807 bp |
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| Protein Length | 268 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640934476 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_001475255 |
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| Protein GI | 157376655 |
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| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
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| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGGTGTT TTGGCCATTT TATTGCGTTT ATTCTGTGCT CATTTCTCAT GGGTTATTAT
TTCTTTGGGA GCAGGGCTGT AGCCGAACAA GATGAAGTGC AATTAAGATT AATTACAGAA
CCTTGGGCGC CTGTTTCATA TGAAGATAAT GGCATAGCCA AAGGGTTTGC TGTTGACTTG
GTGAATCAAC TACAAGCTTC AATGGGGGCC CATTCTCCGG TCGAGGTGCT TCCCTGGGCG
AGAGGCTTTT CTATAGCAAG CTCAACACCG AATATCATGT TATTCGCCAC CTCTGTCGAT
GAAGATCGTC GAAAGCAATT TGATTTTGTT GGCCCTATTC TAACAAGCAA TATCTCTCTC
TACACCAAAG CCGAAGATAC CATAGAGATA AATTCAATAG AGGAGGTGAA GAGGGCAGGA
TTAATTGGTG CATATCGCGG CTCTTTGGGA GAGGGCGTGT TAAGACGGGC GGGAGTGGAA
CAGTTGTTGA TCGCCAGTTT TCCTCAGCAA AATGCAAAAC AATTGATGCG TGGGCGGGTG
CGGTTTTGGT GTCAGGCCGA TATCGCGGTG ACTAGCCTGC TCTCTGAGAT AGGTATCAAA
CCTGAGAGGG TCAAACCCGT ATTTTTATTG TCTGAAATCG ATCTTTATCT GGCCTTTTCA
AAAGGTACCA GTGATTCGGT TATTACGAGG TGGAGTGAGG CACTCACTGC GTTTAAAAAC
TCTGGTTCCT ATAGTAAACT TTTTCGTCGA TGGTTCGGAG ATTTAAACGA ACCCGAAGAG
GTAGAGATAT TGTGGCGCGA GAGGTGA
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| Protein sequence | MRCFGHFIAF ILCSFLMGYY FFGSRAVAEQ DEVQLRLITE PWAPVSYEDN GIAKGFAVDL
VNQLQASMGA HSPVEVLPWA RGFSIASSTP NIMLFATSVD EDRRKQFDFV GPILTSNISL
YTKAEDTIEI NSIEEVKRAG LIGAYRGSLG EGVLRRAGVE QLLIASFPQQ NAKQLMRGRV
RFWCQADIAV TSLLSEIGIK PERVKPVFLL SEIDLYLAFS KGTSDSVITR WSEALTAFKN
SGSYSKLFRR WFGDLNEPEE VEILWRER
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