| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_3250 |
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| Symbol | |
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| ID | 5613873 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 3944091 |
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| End bp | 3944663 |
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| Gene Length | 573 bp |
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| Protein Length | 190 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640934188 |
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| Product | cyclic nucleotide-binding protein |
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| Protein accession | YP_001474982 |
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| Protein GI | 157376382 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0664] cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.007094 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTGAGTA GATTCACAGA GGTTGTTAAT TTTTTCTCCG GTTTTGGCAT TCCAAGTGAG
GTGGTTAAAT CACAACTGTC TCAATTCAGG TCGATCTCAT TGGGCACAGC TGAGGTGTTA
CTCGTTCAGG GGGCGGAGCA GGACTATGGT TATTTTATTG TGTCTGGCAC GCTTAGAGCA
TGTCATTACG GGGAGAGTGG CCTTGAACGA TGTAAGGAGT TTTATTTTGA GGGAGAGCTA
TGTTTCCTCT ATTCAAGTTG GTTGCAGGGA GTGGCGGCTC AATATCAAAT CGAAACTATC
TGTGATGCTG AAGTGATAAA AGTCCCCTTG AGCTTACTGG CATTACCTCA TTTCTTACCC
GCTAAAGTCG CACTATTGCA GCAACAACTG ATATTTAAAG AGCAGAAAGA GGCCCTCTTA
TTACTCAATA CCCCGGAACA AAGGTATCGG CACCTGCAGC AGTATTGGCC GCATTGGGTG
AGTAAGCTTA ACAACATTCA AATTGCCAGC TATATAGGCA TCAACCCTGT CAGCCTGTCT
CGATTAAAAG CGAGAATTAA GTGCGAAAAA TAA
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| Protein sequence | MVSRFTEVVN FFSGFGIPSE VVKSQLSQFR SISLGTAEVL LVQGAEQDYG YFIVSGTLRA
CHYGESGLER CKEFYFEGEL CFLYSSWLQG VAAQYQIETI CDAEVIKVPL SLLALPHFLP
AKVALLQQQL IFKEQKEALL LLNTPEQRYR HLQQYWPHWV SKLNNIQIAS YIGINPVSLS
RLKARIKCEK
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