Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2918 |
Symbol | |
ID | 5609704 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 3532026 |
End bp | 3533435 |
Gene Length | 1410 bp |
Protein Length | 469 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640933858 |
Product | hypothetical protein |
Protein accession | YP_001474653 |
Protein GI | 157376053 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACTTAA TACATTTTAG AACAACACGT AAGGCGCTGG TGTTTGCCAG TATGCTAGTA ATGCTGTCAG CTTGTGGAGA TGATGACACT GAGGTGATTA TTGTAGAGGT TCCAGTTGAG ACACCAATTG AAACACCTGT TGAAACACCA GTTGAGACAG TGCCCGAAGA GGTTGTATTA GAGTATATTG GAACTGAGAA ATGCCTTGCT TGTCATTCAG ATAAGAAATC ATTCTTAGAG ACAGGTCATA ACATGATGCT AACGGAGGTT GTTAACGATG AGGAGCCTCT ATATCCCTTC ACATCTGTAA ACGGTGCTGC TGATGTTATT GAGGGTCTTT TCAATACACT TGGTGACCCT GATGGCTGGA AGGATGTAGG GTATGTTCTT GGCGGGACAA TAACGGCTAA TCTCTTTATT GATAAGAACG GCTACATTAT GAACGGTCAA AAGGCGGTTA TGTTTCTAAA GCCAAAGGGA ACGCAAATCA CCTCTGAAAT GATGATGCCA TACATAAGGA GCACTGAGCC GGACGGTCAT CCCTATGGGC CGTGTGGTAG ATGTCATACC ACAGGCTGGA AAGCTTATAC CTCTGCCTCT GGTGACGAAA GAAACTTGCA TATGCAGAAT GATCTGGATG GAATGCAAGG CACGTTCGCT ATGACTGGGA TTCAGTGTGA AAGTTGTCAC GGTGCAGGTA GTGAGCATAT CAAAGGGCCT TCAAAACATA ACATTGTTAA AATAGCTGAA GCACGAATTG CAGAGGATTT TCTTGCTGAA GATATGGCGA ATGGTAAAGC TGTTTCATGT GTTGAGTGCC ATACAACTGA AGATGCGCGA AGACTGTACC CTGATTATGT GACAGAGTAT GAGCACGCAT TCGGTGAGGG TACTATGAAC TCACGTTTAC CAGTTGTAGG TGAGTTTGGT CAGCCTGAAG GACGTAAAGA TGATGTTAGT GGTGGCGGTA GACATGCGGC GGCAACGCTT AAACGTGTTG ACCCTAATAC AGGGGTTGCA ATGGGTAAGA AGAAAGGCTT TACCTGTTCA ACCTGTCACA ATCCACACCA ATCAGCAGTA AATCATGATA AAGCTGGCCA TGAGAACGCG ATGGTTAGAC AGTGTACAGA CTGCCACACC AAAGGGTTTG CAGATGTTCA GGGTAGTGAT ATTGCATCGG CAGCACATGA GTTTGTAGCT GAGTGTACAG ATTGCCATAT GCCTAACAAC TCACATCTGC TTAAGATTGA CCTTGAGGGT GCAAAGGACG ACCCAAGACA CTTCTCTGCA GACGGTGAGT TTCAAATGCC TTGGCTTCGT GCTTGGGACA GTTGTTCTGG TTGTCATGCG GAAGACTATG ATGCAAGAGC GCAGAAGATC GGTAAGATCC ATAAGGATGT AGGCTTCTGA
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Protein sequence | MNLIHFRTTR KALVFASMLV MLSACGDDDT EVIIVEVPVE TPIETPVETP VETVPEEVVL EYIGTEKCLA CHSDKKSFLE TGHNMMLTEV VNDEEPLYPF TSVNGAADVI EGLFNTLGDP DGWKDVGYVL GGTITANLFI DKNGYIMNGQ KAVMFLKPKG TQITSEMMMP YIRSTEPDGH PYGPCGRCHT TGWKAYTSAS GDERNLHMQN DLDGMQGTFA MTGIQCESCH GAGSEHIKGP SKHNIVKIAE ARIAEDFLAE DMANGKAVSC VECHTTEDAR RLYPDYVTEY EHAFGEGTMN SRLPVVGEFG QPEGRKDDVS GGGRHAAATL KRVDPNTGVA MGKKKGFTCS TCHNPHQSAV NHDKAGHENA MVRQCTDCHT KGFADVQGSD IASAAHEFVA ECTDCHMPNN SHLLKIDLEG AKDDPRHFSA DGEFQMPWLR AWDSCSGCHA EDYDARAQKI GKIHKDVGF
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