| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2896 |
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| Symbol | |
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| ID | 5611987 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 3499151 |
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| End bp | 3499807 |
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| Gene Length | 657 bp |
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| Protein Length | 218 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640933815 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_001474631 |
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| Protein GI | 157376031 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.76004 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.00773647 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCAGATAT TTACTTATAC CCCCCCTTCT ATCCCTTGGT TAGATATTCG ATATAAAGAC
AGAGACATTA TTGTCATTAA TAAACCCTCT GGCTTACTCT CAAATCCAGG CCGGGCTGCA
AATACCTTCG ATTGTGCAAT TAACCGTCTT CTTCAGCGTT ACCCTGAGGC GATATTGGTT
CACAGATTGG ACTGTGCGAC CTCTGGTATT ATGGTTTTTG CACTAAACAA GAAAGCCGAG
TCCAACATCA AAACGCAATT TCAAAACAGG ATGAGCAAAA AGACCTATAT AGCAGAGGTG
CAGGGGCATA TCGTAGATGA GGAAGGGGTT ATCGAACTTG CCATGAAACC CGATACTGAA
CGGCCTCCAC TACAAAAATT GGCAGAGGAA GGTAAACCTT CTAAGACCTA TTTCAAGGTA
CTTGAACGTA GAAAAAACAG TACATTGGTA GAGTTAAAGC CGGTAACGGG ACGGACGCAC
CAGTTACGCT TGCATATGCT GGCAATAGGT CACCCTATTT TAGGGGATGA TTTTTACGGC
GATGAAAAGG TGATCGCGGC ATCGAAGAGG CTTTGCCTTC ATGCCATGTC ACTCAGCATT
ACTCACCCCT ATTCGGGTAA AGCAATGACC TTTCATAGTG CTCACCCTTT CAGTTAA
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| Protein sequence | MQIFTYTPPS IPWLDIRYKD RDIIVINKPS GLLSNPGRAA NTFDCAINRL LQRYPEAILV
HRLDCATSGI MVFALNKKAE SNIKTQFQNR MSKKTYIAEV QGHIVDEEGV IELAMKPDTE
RPPLQKLAEE GKPSKTYFKV LERRKNSTLV ELKPVTGRTH QLRLHMLAIG HPILGDDFYG
DEKVIAASKR LCLHAMSLSI THPYSGKAMT FHSAHPFS
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