| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_2282 |
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| Symbol | |
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| ID | 5611511 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 2761713 |
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| End bp | 2762312 |
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| Gene Length | 600 bp |
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| Protein Length | 199 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640933192 |
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| Product | two component LuxR family transcriptional regulator |
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| Protein accession | YP_001474019 |
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| Protein GI | 157375419 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG4566] Response regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.203996 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTGTGATA TCTACCTCGT CGATGACGAC CAGGATGTAT TAAATTCTTT GAGCTGGATG
CTAGATGGCC TCGGTCTCAA AACTCAGGGC TTTTTAAATG CCGCAAGCTT TTTGAGTGCT
GTCGATATTA CTCGACCTGG CATCGCCATC TTAGACATTC AGATGCCGGG TATGGACGGT
ATTGCGTTAC TTCACCATAT CAAAGTTGCC GCCAGCCCTA TGAGTGTCAT CATGCTTACC
GGTCACGGAA CCATCACTAT GGCTGTACAG GCGATACAAC AAGGGGCTAT AGACTTTCTG
GAGAAGCCAG TCGATGGCGA TAAACTTAGC TTACTGTTGG CGCGGGCAAA AGAGATAAGC
TTACAATCAT TTGATGAACT TCGCCTGCAA ACAGAAATAG AGCATAGAGT CGCAAGCTTA
ACCCCTAGAG AGCATGAAGT GATGTTAAAG GTGCTCGAAG GAAAGCTGAA TAAAGTCATT
GCAGCCGAGC TCAACATTGC CCAACGAACC ATAGAATTAC ACAGACAGAA AGTGATGCAA
AAGATGCAAG TCAGTAACGC TGCAGAGCTG GCCTACCTAA TGGCCAAGAG TGAAGAATGA
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| Protein sequence | MCDIYLVDDD QDVLNSLSWM LDGLGLKTQG FLNAASFLSA VDITRPGIAI LDIQMPGMDG
IALLHHIKVA ASPMSVIMLT GHGTITMAVQ AIQQGAIDFL EKPVDGDKLS LLLARAKEIS
LQSFDELRLQ TEIEHRVASL TPREHEVMLK VLEGKLNKVI AAELNIAQRT IELHRQKVMQ
KMQVSNAAEL AYLMAKSEE
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