Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_2142 |
Symbol | |
ID | 5610552 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 2591241 |
End bp | 2592002 |
Gene Length | 762 bp |
Protein Length | 253 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640933046 |
Product | hypothetical protein |
Protein accession | YP_001473879 |
Protein GI | 157375279 |
COG category | [K] Transcription |
COG ID | [COG2771] DNA-binding HTH domain-containing proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.532898 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.0656443 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATACGA TCGATACAAA ACCTTGTCAG GTTTCACCGC AGCAGATGCA ATTAATCAGT GACTACCTGA TTCAATTCGG GATCACTGAA TTTTTTTACG GGATCACCAC AAAAAACAGA ATGCCTCAGG GAATTGATTT TAAAAAATTG AGCCGTCGTG TCCCCAAAGA GATGCAGAAG GCCCAATACA GTGTCTTTTC GAGTGAGAAG ATACGACGCT TCAGGCACGA CTACCTTCAA TCTTTTGCCC GTATAGATGC CGGTTACCAG GAAAAAAATG TCATGGGATT GAATATCTGG CGCGATCCCG ATTACAGCGG TGGTAAAGGT GCCCAATTTA GGAAGTTGAT GGAGCAGTAT GGCCTCAACA GTCGTGGCGT TTGGTATTTT CCGGTTAAAT ACCATAGTGA TTGGACCGCC GTGTTTGTCT TCTTCTCTAA CCTTGAGCGA AATGAGCTGA CACAGATGCT TAACGACAAC ATCGAGGAGA TAAACGCCCA GCTGCAGCTG TTTTCAAGCT CACTCAACGA GCAATTTATC ACCCAGATAA ATCCAATCAC AAACTTTAAC TGCCTTTCAG ATAAAAGCCT GAAGGTGTTG GCACTTACGG CCGAGGGCTA TGCCTGCGAT GAGATAAGTC ATAAGCTGAT GCTTACTGAA AGTGGTGTGA ACTACCACCT CACACGACTG AAGGAGCTGT TTCATGCCAA AAACCGTGCT CAACTGGTCA ACCTGGCCCA CACATTGGGG GTGCTGGATT AA
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Protein sequence | MDTIDTKPCQ VSPQQMQLIS DYLIQFGITE FFYGITTKNR MPQGIDFKKL SRRVPKEMQK AQYSVFSSEK IRRFRHDYLQ SFARIDAGYQ EKNVMGLNIW RDPDYSGGKG AQFRKLMEQY GLNSRGVWYF PVKYHSDWTA VFVFFSNLER NELTQMLNDN IEEINAQLQL FSSSLNEQFI TQINPITNFN CLSDKSLKVL ALTAEGYACD EISHKLMLTE SGVNYHLTRL KELFHAKNRA QLVNLAHTLG VLD
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