Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1801 |
Symbol | |
ID | 5612781 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 2170111 |
End bp | 2170947 |
Gene Length | 837 bp |
Protein Length | 278 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 640932676 |
Product | AraC family transcriptional regulator |
Protein accession | YP_001473540 |
Protein GI | 157374940 |
COG category | [K] Transcription |
COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 42 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAGTATCA TGCACAAAGA GAGCATCCAA TATTGGCATA ACCCAATATT ACCTGAGGTT GAGCTAAGCC GTGCAAACTT CAAACAATTC GAGTTTGACA GGCATGTACA TCTCGATTAT CACATAGGTG TGGTTTCAAG CGGTTGTCAG CAATATTCCC ATAGAGGCAG TGCTTATCAT TTGGGGCCGG GATTGATATC AAGCCTCAAT CCCGACGAAA CCCACAATGG TCAAAGCTAT ACCTCTGAAG GCTACCAAGT CCATGTGATG TCTGTTCCAT ACCACTATGT CTCTCAAATA AGTCAGGAGG TGAGTCAAAC TGAGGGCTTC TTTCATACCC CCTTAATCGA TGATAATCAT CTATATCAGG CATTTTTAAA GCTTCATATG ATGTTAACTC AGCATCAAAG CAACCTCAGT AGTTTGCAAA TAGAAACCAG CATGCTGGCC TTTACCACCG AGCTTTTTCT ACGCCACGGT AATGTACCAG AGCAGGCCAC AGACAAAAAT AACGCCCTGT CTCAGTCCCA AATCAAGGAG GTTATGGCCA TGTTTCATGA CGATCCTGGC CAGGAATTTC TACTCGAAAC ACTGGCAAAC AGTGTTGGGT TAAGTAAATT TCAGTTTTTA AGGAGGTTTA AGCAATCGAT AGGAATGACA CCACATGCTT ACCTCAAGAG AGTGCGACTC GAATATGCCA AAAAAGCCTT GATTAAAGGT GGAAATGTCG CGGATATCGC ACATCGAGTC GGCTTTTTTG ATCAGAGTCA TCTCAACAAA GCATTTAAGC AAGCCTATCT GATAACACCA GCCCATTTCC AGCGGCGTGT ACTGTGA
|
Protein sequence | MSIMHKESIQ YWHNPILPEV ELSRANFKQF EFDRHVHLDY HIGVVSSGCQ QYSHRGSAYH LGPGLISSLN PDETHNGQSY TSEGYQVHVM SVPYHYVSQI SQEVSQTEGF FHTPLIDDNH LYQAFLKLHM MLTQHQSNLS SLQIETSMLA FTTELFLRHG NVPEQATDKN NALSQSQIKE VMAMFHDDPG QEFLLETLAN SVGLSKFQFL RRFKQSIGMT PHAYLKRVRL EYAKKALIKG GNVADIAHRV GFFDQSHLNK AFKQAYLITP AHFQRRVL
|
| |