| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1794 |
|---|
| Symbol | |
|---|
| ID | 5612838 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 2161564 |
|---|
| End bp | 2163096 |
|---|
| Gene Length | 1533 bp |
|---|
| Protein Length | 510 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640932669 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001473533 |
|---|
| Protein GI | 157374933 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3639] ABC-type phosphate/phosphonate transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.134566 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 42 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTAAGT CTCTGCCTTT CATTGGTTAC TGGCAGAAAA CGACCTTCAC ATTATGGTTG
ATTGCGGCGC TGTGTTTCTA TTTTGCAGAT ACTGAGATCA TCTCTCTAGA TCCCTGGAGT
GAGTTTCGGC TGATGGCTGA AGGCTTTCTC CGGCCTGATT TTTTCGCAAC TGAATATCTG
CTGGAGGCCT TGTGGCAGAC GGTGAGTTTT GCGCTGCTCG GGGTGGTGTT TGGCCTGCTA
TGGGGAGCCC CGCTGGCACT CATCTATTCT AATCGCTTCG TTGCCATGCT ATGTGCCATT
ACTCGATCAA TACATGAGAT TTTTTGGGCC TTGTTGTTTC TTCAAATTTT TGGTCTCTCT
CCGATAACGG GTATTCTCGC CATAGGTTTG CCTTATGGCG CAACCTTTGC GCGTGTTTTT
CACGATATCT TGCTGCAGTC ACCGAAAACG ACAGTTCAAA CCTTACCTTA TGGTACTGAT
AAGGTAAGTC GATATTTTTA CGGTCGAATT AGTCATGTTC TTGTGCCAAT CATGGCCTAT
ATCCGTTATC GTTTCGAATG TGCATTAAGA AGTAGTGCGG TGCTTGGGTT TATTGGCATG
CCGACCCTGG GCTTCTATTT AGAAACGGCG TTCAGGCAAG GTCACTATCA TGAGGGAGCC
GCACTCTTGA TGCTGTTTAT TGCATTGATA GGTACGATAT CGCTCTGGTG CCGTCCCAGG
TTGATTGCTC TCTATTTTGT CGTGGCATTG TTCACCTTAC CAAGTATTCC ACCTGTCGAA
GGGGCGCTGC TGTGGCGTTT CATCACACAA GATATTCTTC CCCCCGCCTT ACAGAATCTG
TCCACATGGT CCCAGGTCGA TCTTGGGATC ATGCAGTCGC TATCGAACTG GAGCCTGGAT
CTATTGGTGG AGCAAGCCCT TCCCGGCATG ATAGTGACAC TCTTGTTAGC ACTGGTTTCT
TTGGCCATGG CTCATGGCGT TGCGGTTGTG GGTTCGGGAC TGGCGTCAAA CTTGCTGACT
GGAAAGGTTA TTTCCAGGGT GATTCATCTG TGCCTCCTCG TTTTGAGATC GGTGCCGGAA
TATATCTTTG CCTTCCTGTT TATGATGTTG CTTGGACCGT CTATGTTGCC TGCAATGTTA
GCGCTTGCGC TGCATAACGG GGCATTAATT GCTTACCTTA CGGTAAGACA GTCGGACACG
ACTCAGGTCA GTCCCCATTA TAATGGTCGA ATCGATGGGT ATTGCTATGA TCTCTTGCCT
CAAATTTATC CTAATTTGAT GGGACTGTTG TTCTATCGTT TCGAGGTGAT ACTAAGGGAG
ACGGCCATTT TTGGTATCCT GGGAATAGCA AGTTTAGGCT TTTATATCGA CAGTGGTTTT
TCTGAGATAC GATACAGCTC GGCCCTGTTT TTAATGGGAT GCACGGCACT GCTAAACATA
GTCGTCGATA TCATCAGTCG TCGTTTATTG ACTGCAAACA CAGGAACTCA GATAAGTTGT
GCCCGGGAGA GTGCCATAAG GTCGGTTAAA TAG
|
|---|
| Protein sequence | MLKSLPFIGY WQKTTFTLWL IAALCFYFAD TEIISLDPWS EFRLMAEGFL RPDFFATEYL
LEALWQTVSF ALLGVVFGLL WGAPLALIYS NRFVAMLCAI TRSIHEIFWA LLFLQIFGLS
PITGILAIGL PYGATFARVF HDILLQSPKT TVQTLPYGTD KVSRYFYGRI SHVLVPIMAY
IRYRFECALR SSAVLGFIGM PTLGFYLETA FRQGHYHEGA ALLMLFIALI GTISLWCRPR
LIALYFVVAL FTLPSIPPVE GALLWRFITQ DILPPALQNL STWSQVDLGI MQSLSNWSLD
LLVEQALPGM IVTLLLALVS LAMAHGVAVV GSGLASNLLT GKVISRVIHL CLLVLRSVPE
YIFAFLFMML LGPSMLPAML ALALHNGALI AYLTVRQSDT TQVSPHYNGR IDGYCYDLLP
QIYPNLMGLL FYRFEVILRE TAIFGILGIA SLGFYIDSGF SEIRYSSALF LMGCTALLNI
VVDIISRRLL TANTGTQISC ARESAIRSVK
|
|---|
| |