| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1700 |
|---|
| Symbol | |
|---|
| ID | 5609961 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | + |
|---|
| Start bp | 2037876 |
|---|
| End bp | 2038955 |
|---|
| Gene Length | 1080 bp |
|---|
| Protein Length | 359 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 640932570 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001473439 |
|---|
| Protein GI | 157374839 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0628] Predicted permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.23154 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0296077 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGAGAA TTGATACCCA GTCTGTTGCC TATAAGGGAT TTGCGATCAT GGCTTTCATT
GTCGTGATTT TGGCCGGGAT AAAAGCGGCG AGTCCTATAG TGGTGCCATT TGTGTTATCT
GCCTTCATTG CCGTGATCTG TAATCCGATG ATTGGCGGTC TCACCAGATT GAAAGTGCCA
AGAGCATTAG CGGTCCTGTT AATGATGGTG TTTATTGTGA TGATGGGGCT CTGGCTGGCA
CAAATTGTCG GTAGCTCCAT CAATGAATTT TCAACCCAAC TTCCCCATTA TCGGGATCAA
CTCGTTGAGC AGTTTGGTTG GATCACCGGA AAGCTACGTA CTTTTAATAT CATCATTACC
AAAGAGCAGA TTTTAGCCTA TTTCGATCCA GGCATTGCGC TATCCATGAC AACCAACATG
TTATCCGGCG TCGGCAGTGT GATGGCAAAT CTGTTTTTAA TTATTCTTAC CGTCGTATTT
ATGTTGTTTG AGTCAGAAAC CTTGCCCAAG AAATTGCACT TTGCGCTTGA TGATCCGGAC
ATGAGAATGC AACAAATTGA CCGGTTCCTG CATTCAGTTA ATCAATATAT GGTGATTAAA
ACCTTAGTCA GTTTAGCGAC CGGCGTTATT ATCGGCACAG GTTTAGCCAT TATTGGTGTA
GATTATGCGC TTTTATGGGG GGTGGTCGCC TTCCTGTTTA ACTATATTCC AAATATTGGC
TCCATTATTG CTGCGATCCC CTCTGTCATG TTGGCATTTA TTCAATTAGG CCCTGCCGCC
GCTGGCGGAA CCGCACTGCT CTATCTAGGT ACCAATACGG TTATGGGCAA CGTGGTAGAG
CCAAAATATA TGGGGAAAGG CTTAGGTCTT TCGACACTGG TTGTATTTCT GTCATTGATT
TTTTGGGGTT GGTTACTCGG CTCTGTTGGC ATGCTGTTGT CGGTTCCGCT GACTATGATC
GTGAAAATTG CGCTTGAGTC CAGTAAGGGC GGAAGCTGGC TGGCGATACT GTTGGCCGAT
GATGTGGACG AGGTGAAGCC GCCCTCTCAA GATGATAAAG ACAGTCCCGA GGCCGTGTAA
|
|---|
| Protein sequence | MPRIDTQSVA YKGFAIMAFI VVILAGIKAA SPIVVPFVLS AFIAVICNPM IGGLTRLKVP
RALAVLLMMV FIVMMGLWLA QIVGSSINEF STQLPHYRDQ LVEQFGWITG KLRTFNIIIT
KEQILAYFDP GIALSMTTNM LSGVGSVMAN LFLIILTVVF MLFESETLPK KLHFALDDPD
MRMQQIDRFL HSVNQYMVIK TLVSLATGVI IGTGLAIIGV DYALLWGVVA FLFNYIPNIG
SIIAAIPSVM LAFIQLGPAA AGGTALLYLG TNTVMGNVVE PKYMGKGLGL STLVVFLSLI
FWGWLLGSVG MLLSVPLTMI VKIALESSKG GSWLAILLAD DVDEVKPPSQ DDKDSPEAV
|
|---|
| |