| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1626 |
|---|
| Symbol | |
|---|
| ID | 5611388 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sediminis HAW-EB3 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009831 |
|---|
| Strand | - |
|---|
| Start bp | 1940442 |
|---|
| End bp | 1941371 |
|---|
| Gene Length | 930 bp |
|---|
| Protein Length | 309 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640932496 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001473365 |
|---|
| Protein GI | 157374765 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1721] Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.00115856 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGAGA TAGCCTTGCC TCTTTTTGCT GATGGGGTAA ATCTCACTCA AAAAGAACTT
TTAGCGTGCC AAAACCTAGC CAGAGCACTT CCCGAGAAGC GCTCCAAGGC CCGTGCAAGT
CTCTCCGGTG ACAGAGCGAG CCTAATTAAA GGTCGCGGAA TGGAGTTTGC TGAGGTGCGT
CACTATCAAG CCGGTGATGA TGTCCGAACC ATCGACTGGC GAGTGACTGC CAGAACAGGT
AAGGCGCACA CTAAGCTATT TGTAGAGGAG AGAGAACGGC CGATTTTAAT CCTGCTCGAT
CTCAGTCACA GCCTCTATTT TGGCTCAAGC CTACTGCTTC AGTCCGTTCA GGCGGCGCAC
TTAGCCACGA CCTTAGGTTG GAGTGCCATT TTTCATGGTG ACAGATTAGG GGCATTAATC
GCGACAGAGC AAGAGCATCT TGAATTAAAA CCGAGAAGTC GTCAGCAGGG GATCTTACAG
CTGATCTCCG GCATAGAATC CCTGCATAAA AAACAACTCA GTCAGATATC TGAGTATCAA
AGTGAACCCG AGCATCTTTT TAAGGCCTGT CAGCGATTAA GGCGGATAGC GAAACCCGGC
TCTCTAATCT GGATAATCAG TGATGGCAGT AATTTTAATG ATGCTTGCCT CGCACCGTTA
TCGGATCTTA AACGTCATTG CGATATGGGG GCGTTCTTAA TCACTGATCC ACTGAGGCAA
GGTACACTGG CATTGCCAAA GCAATTCCAG TTACCGGTCA AGGAAGGCAA TAAAGAACTT
ACGCTCAATC GCGCAGGCTA TGATGCCTGG CTGAAGAAAC AACTCGATTC TCAAAAACAA
TTTACACAGA TGATGCAAAA GCTGAATGTT CAAACCCGGG TCTTAGATGC GGGAGATACA
CTAAATAATC AAATTGGGGC ATTGAGGTAA
|
|---|
| Protein sequence | MAEIALPLFA DGVNLTQKEL LACQNLARAL PEKRSKARAS LSGDRASLIK GRGMEFAEVR
HYQAGDDVRT IDWRVTARTG KAHTKLFVEE RERPILILLD LSHSLYFGSS LLLQSVQAAH
LATTLGWSAI FHGDRLGALI ATEQEHLELK PRSRQQGILQ LISGIESLHK KQLSQISEYQ
SEPEHLFKAC QRLRRIAKPG SLIWIISDGS NFNDACLAPL SDLKRHCDMG AFLITDPLRQ
GTLALPKQFQ LPVKEGNKEL TLNRAGYDAW LKKQLDSQKQ FTQMMQKLNV QTRVLDAGDT
LNNQIGALR
|
|---|
| |