| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1344 |
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| Symbol | |
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| ID | 5613790 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1598623 |
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| End bp | 1600293 |
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| Gene Length | 1671 bp |
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| Protein Length | 556 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640932209 |
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| Product | PepSY-associated TM helix domain-containing protein |
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| Protein accession | YP_001473083 |
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| Protein GI | 157374483 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3182] Uncharacterized iron-regulated membrane protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.194528 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.921283 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGAGA CATTTTTTCG CTCCATGACC TGGTTACACA CCTGGGTTGG CCTGCTGGTA
TGTTGGGTAC TTTTGTTAGT TTTTTTTGCA GGCACGGTTA GTTATTACCG CTATGAGATA
TCCCTATGGA CCAAGCCGGA AATTCATAAG GATGTTTTTC AAGCCTATCA AACAGACAAC
TTAGTTCACC AGCTTCGAGA CGGGCAAGCC TACCTATCTG AGCACGCTAA AAGTGCAAAA
GATTGGCGCA TTAACTTCCC CACCGAACGT AAACCTTATC TCAGCTATGG CTGGCAGACA
CTACCGAAAC CCGGCGAACG AAGGGGACAG TTTATTGAGC ATATCGCCCA TACAAATGGT
CAGGGTATGG TCACCGACGT ACGTGATTCA CGCGGTGGTA ACTTCTTCTA TAGATTACAT
TTCGACCTTC ATTACATGCC GGCAAAAATC GCTCGTTGGA TTGTCGGGTT TTGTACTATG
TTTATGTTGC TGGCTTTGAT CAGTGGCATT GTCATTCATA AGCGCATCTT TAAGGATTTT
TTCAGCTTCA GGCGAAATAA GGGCGGTCGT TCATGGCTCG ATGCCCATAA TATCAGCTCG
GTACTCGCCC TTCCCTATCA TTTGATGATC ACCTATACCG GCCTAATCAC TTTGATGTTG
ATGTATATGC CTTGGGGGGT GATGACCGCC TATGATGGTG ACACCCGTGC ATTTCGCGCG
GAACTGAAAC CGGGACGAGA GCAAGTTGCC GCTTCGGGTA CCCCGGCACC ATTAATTCAA
CTGAGTACAT TACTCCCCGC CGTAAAGACG AATTGGGGAG ATACGCCGAT TAAACAGGTG
GTGATCAGCA ATATCAATGA TGAAAACAGT CGGATCAGTT TCTATAAAAA TACCCAACAG
TCAGTAACAG ACCTGCGTAT ACCCCTGATA TTCAGCGGTG TATCTGGTGA GCAGTTGAGT
CAAGCAGCCG ATACCCCCTC GGCAGCTCAT GCCACACACG ATACGTTAAT GTCGCTGCAC
ACGGCTCGTT TTGCTGAGCC GGTATTAAGG GGATTCTTCT TTATCTGCGG TTTCATGGGC
TGCGCCATGA TAGCCACCGG AACCCTGTTA TGGGCGGTGA AGATCCGCCA AAAACAGCAA
AAAAGTATCA AACAGGGCAA CAAACCAAGC TTAGGCCTGC GTCTGGTAGA GGGGCTAAAT
CTGACTTTTA TCGCAGGCTT ACCTCTGGCA ACCTGTGGAT TTTTCTATGC TAACCGGCTC
CTGCCGGCAC AGATGGCAGA CCGGCCTCAA TGGGAGGTAC ACAGCTTCTT TGCCGTTATC
TGTTTAACCG CACTGCTGGC TTACTTTGAC CGCAGCCTGA CAAGCTGGCG CAGAGTACTG
GGGCTTAGTG CGGTTACCTT TATGGCGGTC CCTCTTCTTA ACTGGGCGAC CTCCAGCCAA
CACCTGTTTC AAAATATTGC CAGCCATCAA TGGGCATTAG TAGGTTTCGA TCTCCTCTGT
CTGTTGATAG GAATAGCATT ATGGTTTGCA AGAGATAAAT TAGCTCACAC TCACGCTAAG
CCCTCTACTC GTGTCGCGGC AAACACTGCA CGTCCGAATA AAGAAAAACG GGTTCTTACA
GCGACAAAGG TGTCGCCTGA GCTGGAGCCG TCAGCTAAGG AAGGTGCGTA A
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| Protein sequence | MKETFFRSMT WLHTWVGLLV CWVLLLVFFA GTVSYYRYEI SLWTKPEIHK DVFQAYQTDN
LVHQLRDGQA YLSEHAKSAK DWRINFPTER KPYLSYGWQT LPKPGERRGQ FIEHIAHTNG
QGMVTDVRDS RGGNFFYRLH FDLHYMPAKI ARWIVGFCTM FMLLALISGI VIHKRIFKDF
FSFRRNKGGR SWLDAHNISS VLALPYHLMI TYTGLITLML MYMPWGVMTA YDGDTRAFRA
ELKPGREQVA ASGTPAPLIQ LSTLLPAVKT NWGDTPIKQV VISNINDENS RISFYKNTQQ
SVTDLRIPLI FSGVSGEQLS QAADTPSAAH ATHDTLMSLH TARFAEPVLR GFFFICGFMG
CAMIATGTLL WAVKIRQKQQ KSIKQGNKPS LGLRLVEGLN LTFIAGLPLA TCGFFYANRL
LPAQMADRPQ WEVHSFFAVI CLTALLAYFD RSLTSWRRVL GLSAVTFMAV PLLNWATSSQ
HLFQNIASHQ WALVGFDLLC LLIGIALWFA RDKLAHTHAK PSTRVAANTA RPNKEKRVLT
ATKVSPELEP SAKEGA
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