| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1339 |
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| Symbol | |
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| ID | 5610928 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 1591692 |
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| End bp | 1594976 |
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| Gene Length | 3285 bp |
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| Protein Length | 1094 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640932204 |
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| Product | peptidase S41 |
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| Protein accession | YP_001473078 |
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| Protein GI | 157374478 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4946] Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0115783 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.655881 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACTTC GTCTCTCTTT TGTCTGCACT TTATTAGCAC TCGGCAGCCT AAGTGCCTCC
AGTGCCTTCT CATCCGAATC GGAAAGTCTA GGTTATTACC GTGCCCCGGC CTTGAGTGAT
AACACGCTTG TCTTTACCGC CGAAGGCGAT CTCTGGACTA AGGAGCTGAC CCAAAGCCGA
GCTCAAAGAC TCACCAGCCT ACCGGCCGAA GAGTTGGGCG CCAGTATCTC AAAAGATGGT
CAGTGGGTGG CTTATGTGGC CAATTATGAA GGTGCCAGCG AAGTGTATGT GATCCCGATT
GCTGGTGGGA AAGCAAAGCG AGTGAGCTTC GAAAATAGTC GGGTCCGGGT ACAAGGTTGG
ACCGCCGAGG GCGAAGTGCT CTACGCCACC GACAATGCCT TTGGCCCTGC AAACTACTGG
GTCTTAAGAA CCGTTAACCC CGAGACGTTA ATGACCACCG ATCTGCCTCT GGCCGATGCC
ATCGAAGGGG CTATCGATGA TAGTGGTGAG TATCTCTATT TTACCCGCTT TGGGCTACAA
ACTACCGGGG ATAACGCAAA AGTATATCGA GGTGGAGCTA AGGGCGAGTT ATGGCGATTT
AAACTGGGCT CGAAACAGGA AGCCGAATTG TTAACCGCTT CTCACTCTGG CTCTGTTCGT
CAGCCCATGC TGTGGGATAA CCGTCTGTAT TTTGTGAGTG ATAGCGATGG CAATGACAAC
ATCTGGTCAA TGATGACAGA TGGTCAGAAT TTGAAACAGC ATACCCAGTT TACTGATTGG
CAAGTCAGAG GGGCGCGTTT AGATAAAGGT CGTATCGTAT TTCAGCAAGG CGCGGATATA
AAACTGTTCG ATATTGCGGC TAATGATACC CGTGTCTTAG ATATCGATCT GGTCTCAGAC
TTCTCTCAGC GTCGTGAGCA TTGGGTGAAC AGCCCTATGA AATATGCGAC ATCGACACAA
GTATCCCCCG TAGGTGACAA AGTCGTTATC ACCGCCAGAA GCCATGTGGC CATCGCCGGT
GTTGATGGAT CGCGCCTTGT CGAGATAGCT CTTCCGGGAA ACAGTCGTAT TCGAGCCTCG
GTAATGAGTC CCGACGGCCA GTGGGTCTAT GGTATCAGTG ATGCATCCGG TGAGCAGGAG
ATCTGGCAGT TCCCGGCCGA TGGAAGTCAA GGGGCCAAGC AGTTAACCAA AGATGGTAAG
ACGCTAAGAA TGTCATTGAG TGTTTCACCC GATGGACGTT ACATCGCCTC GGATGATTAC
GATGGCAATC TCTGGTTGTT AGATCTAAAG AAAAATCGCA GTAAGAAGAT CATCACCCAA
GGGGAGGGGT TAGGTCCCTA TGCCGATGTG GTCTGGTCTG GCGATAGTCG ATTTATTGCC
ATTACCAAAT CTGAGCTGGG TAAACCCAGA CCTCAAATTG TCTTGTATTC ACTGGAAGAA
AACCGCAGTG AAACAGTGAC GAGCGATAAA TATGAATCCT ATTCCCCCGC CTTCAGTAGC
GATGGGAAAT GGTTATATTT CTTATCTAAT CGTCAGTTTA CTGCGACGCC GACCTCACCA
TGGGGCGATC GTAACATGGG ACCCATGTTC GATAAACGCA GTGAAATTTT CGCCATCGCC
CTGGACAAGA GTGCCAGCTT TGCGTTCCGT AAACCTAATG AGCTAATGCC TGCAGAGTCT
GACAAGAAGT CAGATAAAGA GGCCGACAAG CTTAAGATTA ATGTTGACTG GAAAGGACTT
AATCAACGTC TATGGCAAGT GCCGGTCGGT TCTGGTAATT ACTCAAAACT GAGTCTTAAA
GAGGACAGCT TATACCTGCT GGACAGGGCA TCAGGACGCA GCAGTAAGCC TGACTTGAAA
GTTATAAAGT TTGATCCCTT AAGCCCTAAG GTCGAGACAT TTGCCAAAGA CGTGGGAGAT
TATGCGCTCT CAGCCGACGG GAAGAAAATA TTCATACGCA AGCACAGCAA CGGTGGCAAA
GAGATGCTGA TTGTCGATGC GGTTGATAAG CTACCAAAAG AGCTGAAAAA TGCCAAGGTG
CAAACCGGGC AGTGGCAACT CGCTATCGAG CCACAACTGG AGTGGCAACA GATGTTCGAA
GATGCCTGGT TGATGCACAG AGACTCCTTC TTTGACAAGA CAATGCGTGG CTTGGACTGG
CAAGCAACTA AGGCTAAATA CCAGCCATTG GTCGACAGGC TAACCGACAG GCATGAGCTG
AATGACATCT TTAAGCAGAT GATGGGCGAG TTGGACTCGT TGCACTCTCA GGTGCGAGGA
GGCGATCTCC CTAAAGACAG TAAGATGGCC AAGGCATCGA GTCTCGGGGC TCGCCTCGAA
CAGACCAAGT CCGGCGTGAA GATATCCCAT ATTTACCAGA ATGATCCTGA GCTTCCTGCA
CAGTCATCTC CACTGGCCAG GGTCGAAGTC GATGCTGAAG TGGGCGATAT TATTCTGGAG
ATCAATGGTA AGTCGGTAAC CAATGTGGCC GATGTGACGC GCTACTTAAG AAACCAGTCT
AAAAAGCAGG TACTACTTAA GCTTAAGCGT GGAAAGAAGC AGCATAAGAC CATCGTCATG
CCTGTTGACA CCAGAGTCGA TGCCAAGCTG AGATACTTAG ATTGGGTCAA TCATAATGGC
AATAAGGTCT CACTGGGAAG TGAGGGTAAG ATAGGCTATC TGCACCTGTA CGCTATGGGC
AGTGGTGATA TTGCCAGCTT TGCACGTGAG TTTTACGCCA ACTTTGAAAA AGAGGGGCTG
ATTATCGATG TGCGCCGTAA CCGAGGCGGC AACATTGATA GTTGGATCAT CGAGAAACTA
CTGCGCCGTA CCTGGGCATT TTGGCAACCG ACTCGTGGTA CGCCAAATGC CAATATGCAA
CAGACCTTCC GTGGACATCT TGTGGTGCTT ACCGATCAGT TGACCTACTC GGATGGTGAA
ACATTCGCGG CCGGTATCAA GGCACTGGGT GTTGCTCCTT TGATAGGAAA GCAAACGGCG
GGAGCGGGTG TTTGGTTATC CGGTCGTAAT TCGCTGACAG ACAAAGGGAT GGCACGGGTG
GCCGAGTATC CGCAGTATGC GATGGACGGA CGTTGGGTGC TCGAAGGGCG AGGTGTTAGT
CCGGATATCG AAGTCGATAA CCTACCTTAT GCCACATTCA CAGGTGGTGA TGCTCAATTA
GATAAAGCGA TCTCTTACCT CAAGGATGAG CTGATCCAAC AGCCGATTAT GCCATTAAAG
GCGCTACCAA TATCACCCGA TGGAGTGGCT GAGGATATTA AGTAA
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| Protein sequence | MKLRLSFVCT LLALGSLSAS SAFSSESESL GYYRAPALSD NTLVFTAEGD LWTKELTQSR
AQRLTSLPAE ELGASISKDG QWVAYVANYE GASEVYVIPI AGGKAKRVSF ENSRVRVQGW
TAEGEVLYAT DNAFGPANYW VLRTVNPETL MTTDLPLADA IEGAIDDSGE YLYFTRFGLQ
TTGDNAKVYR GGAKGELWRF KLGSKQEAEL LTASHSGSVR QPMLWDNRLY FVSDSDGNDN
IWSMMTDGQN LKQHTQFTDW QVRGARLDKG RIVFQQGADI KLFDIAANDT RVLDIDLVSD
FSQRREHWVN SPMKYATSTQ VSPVGDKVVI TARSHVAIAG VDGSRLVEIA LPGNSRIRAS
VMSPDGQWVY GISDASGEQE IWQFPADGSQ GAKQLTKDGK TLRMSLSVSP DGRYIASDDY
DGNLWLLDLK KNRSKKIITQ GEGLGPYADV VWSGDSRFIA ITKSELGKPR PQIVLYSLEE
NRSETVTSDK YESYSPAFSS DGKWLYFLSN RQFTATPTSP WGDRNMGPMF DKRSEIFAIA
LDKSASFAFR KPNELMPAES DKKSDKEADK LKINVDWKGL NQRLWQVPVG SGNYSKLSLK
EDSLYLLDRA SGRSSKPDLK VIKFDPLSPK VETFAKDVGD YALSADGKKI FIRKHSNGGK
EMLIVDAVDK LPKELKNAKV QTGQWQLAIE PQLEWQQMFE DAWLMHRDSF FDKTMRGLDW
QATKAKYQPL VDRLTDRHEL NDIFKQMMGE LDSLHSQVRG GDLPKDSKMA KASSLGARLE
QTKSGVKISH IYQNDPELPA QSSPLARVEV DAEVGDIILE INGKSVTNVA DVTRYLRNQS
KKQVLLKLKR GKKQHKTIVM PVDTRVDAKL RYLDWVNHNG NKVSLGSEGK IGYLHLYAMG
SGDIASFARE FYANFEKEGL IIDVRRNRGG NIDSWIIEKL LRRTWAFWQP TRGTPNANMQ
QTFRGHLVVL TDQLTYSDGE TFAAGIKALG VAPLIGKQTA GAGVWLSGRN SLTDKGMARV
AEYPQYAMDG RWVLEGRGVS PDIEVDNLPY ATFTGGDAQL DKAISYLKDE LIQQPIMPLK
ALPISPDGVA EDIK
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