| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_1264 |
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| Symbol | |
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| ID | 5612461 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 1500326 |
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| End bp | 1501336 |
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| Gene Length | 1011 bp |
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| Protein Length | 336 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640932117 |
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| Product | SecC motif-containing protein |
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| Protein accession | YP_001473003 |
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| Protein GI | 157374403 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00874366 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.00404775 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | TTGAATAATC ACTGTTTTGA CCGTCCTATC ATAATCTTGT CGGCCCCGCG CTCAGGCAGC
ACCCTACTGT TCGAAATTCT TTCTAAGAGC CGCTCACTGT GGACTATAGG AGGAGAGAGT
CACGCAATTA TAGAGGGTCA TAGAGAACTT AATATCACTT CGCGAAACTT CGATTCTAAC
GCCTTAGACG AGAGCGACTG GAATAACGAG TTACATCAAT CTCTGCGTCA GGGGTTTAAA
GCACAGTTAC GAAACGCAGA TGACAAGCCA TATCGAGAGG CTGATGGGCC TGTCAGGTTT
CTTGAAAAGA CGCCAAAAAA CAGCCTCAGA ATCGACTTTC TCAATAAGGT TTTCCCCGAC
GCCATCTTTA TCTACCTGAT CAGAGAGCCT AAAGAAAATA TCAGCAGCAT AATGCAGGCA
TGGAGATCGG GCCGATTCCG TACCTACCCT ATGCTCCCGG GCTTTGGTGG GGATTGGTCA
CTCCTGCTGC CAAAAAATTG GCGAGCACTA AAAGGACTAC CGCTGGAAAA TGTTGCCGCA
TTTCAATGGC TGCAAGCCAA TGAATCGATT ATGAACTCCC TGTCCAAGCT ACCCGATGAA
AAGTGGCATA TGCTCTCTTA CAGAGATCTC GTCGGCTCCC CCTATGAAAC CATCTCATCC
TTGACCGAGT TCTGCCAAAT CCCATTCGAT GATGAGTTAA AAAAGATCTG TGGCGACGCC
CTCCCCCACT CCAGATATAC CGTTTCCGCT CCGGCAGTAA ACAAGTGGCT GCAGAACTAC
GATGCGATAA AAAGCATATG GCCTGGCCTG CTATCTTGCA TCGACAAAAT GAATAGCCGG
TTAACTAAAT TCGGCCTCAC TCATCTGGAC AGAGAGTTGC AGGATAATCT GGCACCTTCG
GTCTCACCAA AGAGTACTGC CGGTGTCTCA TTTTCAGGTA TATCCAGAAA CGCCCCCTGC
CCATGTGGTT CACAGAAGCG CTTCAAACAT TGTCACGGCC TAGCCCGATA G
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| Protein sequence | MNNHCFDRPI IILSAPRSGS TLLFEILSKS RSLWTIGGES HAIIEGHREL NITSRNFDSN
ALDESDWNNE LHQSLRQGFK AQLRNADDKP YREADGPVRF LEKTPKNSLR IDFLNKVFPD
AIFIYLIREP KENISSIMQA WRSGRFRTYP MLPGFGGDWS LLLPKNWRAL KGLPLENVAA
FQWLQANESI MNSLSKLPDE KWHMLSYRDL VGSPYETISS LTEFCQIPFD DELKKICGDA
LPHSRYTVSA PAVNKWLQNY DAIKSIWPGL LSCIDKMNSR LTKFGLTHLD RELQDNLAPS
VSPKSTAGVS FSGISRNAPC PCGSQKRFKH CHGLAR
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