Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ssed_1110 |
Symbol | |
ID | 5611909 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sediminis HAW-EB3 |
Kingdom | Bacteria |
Replicon accession | NC_009831 |
Strand | - |
Start bp | 1322401 |
End bp | 1324989 |
Gene Length | 2589 bp |
Protein Length | 862 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640931959 |
Product | Outer membrane receptor protein mostly Fe transport-like protein |
Protein accession | YP_001472849 |
Protein GI | 157374249 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGATCTG ATTACCAACA CCTTTGCTCT TCTAAGATGC TAAAGAGAAG CAAAATTGCA CAAGCCGTCC TTTTCGCTAT ATCAATAGCC CCTATCACTC TTCAAGCTGA AGAAGCAGAA CCACCATCAG CAGACACTGA TAGCTCCTCT TTAGAAGTGA TCACGGTAAC GGCGCAGAAA CGTGTGCAAA ATATTATGAA GGTCCCGGTA ACGGTTGGAA CAGTTTCAGA GAGCACCATA AAAGAGAGTA GCTCTATACT CCTCAGCGAT CTGGACAAGT TTATTCCCGG ATTTGATTTT AGCGATGCCA ACATGACACA GGGTGGCGTA ACCATGCGCG GGATCTCCAG TCCAAATATC AGTGTCGGTG GTGACCCCTC ATCAGCCGTA TTCTTCGATG ATGTCTATAT GCCCAGAGCG GCACAGAATG TCATCTTTTC CGACATGGAG CGCATAGAGG TATTAAAAGG CCCTCAAGGG ACACTGTTTG GGCGTAATGC GGCCATGGGT GTCGTCAACA TGGTGCCTAA AAAACCGATA TCCGATCTGG AGGGCTTCGT TAAAGGCAGT TACGGTACCG ATAACCTCCA GCGCTATGAG GGGATGATTA ACGTCCCCTT AAGTGAAACA TTCTTTATTC GGGCTAACTT CTTAGCTAAC GCCCAAGATG GAATCGTCGA AAATGTAGCA GACCCAAGCT GGAACCAGAA TAGCAAGATC TGGGATCTCG GAGAGCGGGA CCATAAGGCC GCCAGACTCT CTATGCTCTG GAAAATCGCC GATTCAACCA ACCTCCAGCT CTCCTACGAT TGGGACGATC TGGAGCAGGG TCCTCCGATG GCGATAGGCA TTAGTGAATA TGCTTACAAT GGCGGGAAAA CCCCATTTGC AGATAAAGCC GAAAATGATG TTAAAAATGG CGTCGAAGCG CGAGACATGT ATGCACTGAC CGCCAAACTT AATCATGACT TTAACAATGA ATGGTCGATG AAATATATCC TCAGCTACCG GGATTGGGAG ACGGTCAACC GTGAAGATGA GGATGGTACG GCTGACATCA CCCGCTACTT CGACACCTCA AATAATGAAG ACTCGAGCAT CATCTACAGT GAGCTGCAGC TCAACTACAT CGGCGGTAGA GTCAATGCAG TCGCAGGCTT CTCCTACTCT AAAGAGGATG TTAACCAAAG AACCGAACTT AACCTGACAG CAGATACCGC GGCAAGAATG ATAACCTCAG AGCTTAACGA GCAGATTGGC GGGATAATGT CGGGTCAACT CGAAGCCATG CTAGGTGGCA ACACCGACGC CCATGCGGAA GCGGCATTTG GCCCAGGCAC GACCTTTGCC GGCGTCGTCG ACAGCATCTA CTCCTCTTCC GGGTTCCCGA TGGATCACCT CTGGAACGCC AATGAGTGGG CCAATGTTCT GAACGTACTC GAGTTCCCCG GCTCCCCCTA CTCACCAGAG ATGGTCGAAG CTACGGGCGA TATGACCTAT GACGCCGTAT CAATGGCCAT GGGGATCCCG GAAATTTTTG GGCCAAGCTT TGCCGGTCAG TGGTGGCAGG AGAATATCTA TAACAGTGGT GATTTTACGA ACTGGGGAGT CTTTGCCGAT GTCGATTATG CCCTCACCGA CAAGTGGAAT ATCATAGGAG GTCTGCGCTA TTCCAAAGAT CAAAAAGAGT TTAGCTGGTA TATCCCTAAA ACCACCTTCG CCCAGGTGCG TGAAGGGGTC AGTAATATCT TGTTCGATGA GGTGGATATG AGCAGCTCTG ACTCATGGGA TGAGATAACC GGGCGCTTGG TGACCAGCTA CCAGCTCACC GACAGGCATA TGGTATTCGC CTCATACTCA ACGGGCTATA AATCGGGTGG CTATGACTCA CTGCAACCCA GTACAGAGTC ATTCGCACCG GAGAACACGA CTAACTATGA GGCAGGTTAC AAAGGGATCA TCTCTGACTC CCTGATAGCC AACATCAGCG CCTACTATCT GGAGGTCGAT GGTCTTCAAA CGACGGTATC TTCACAGCGG CCTGACAGTA CAACGGCTGT GCCCTTGATC ATCAACCTGG ATAAGGAGAT AACAGGCGTA GAGTTAGATC TTCGCTGGAT GGCAACCGAT AACCTGACAC TCGGTGTCGT TAGCGAAGTA CGAGCCACTG ACACTTATAA CCCTGAGTTT TACAACTCGG TTGGCGAACT TGTACCAGCT GAAACACGCT CCGAAGATCC CGCTTTAAAC TACACATTAA CCTTAGACTG GATGCCAGAC TTTGGAGTAG GAACCACCAA CCTACATCTG GACTATCAGT TTGTTGAAAA TACCAACGCT GACGAAGTGG GACTGGAGGA TTATAAGAAA GCGATACCCG AATATTTCAA AGATATGAAG AATCTCAGTG CACGACTCTC ATGGACTGAC GACAGTGAAA GTCTCGAGAT CGGACTCTGG GGACGCAACC TGCTCGACGA GAGATATATG GAGTCACTGG GCGGCTTAGC CGTGGATTAT CTGGGTACAC CACACGGTAG AGTTAACCGT GGATTAGAGA CAGGAATTGA TCTGCAGTAC ACATTCTAA
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Protein sequence | MRSDYQHLCS SKMLKRSKIA QAVLFAISIA PITLQAEEAE PPSADTDSSS LEVITVTAQK RVQNIMKVPV TVGTVSESTI KESSSILLSD LDKFIPGFDF SDANMTQGGV TMRGISSPNI SVGGDPSSAV FFDDVYMPRA AQNVIFSDME RIEVLKGPQG TLFGRNAAMG VVNMVPKKPI SDLEGFVKGS YGTDNLQRYE GMINVPLSET FFIRANFLAN AQDGIVENVA DPSWNQNSKI WDLGERDHKA ARLSMLWKIA DSTNLQLSYD WDDLEQGPPM AIGISEYAYN GGKTPFADKA ENDVKNGVEA RDMYALTAKL NHDFNNEWSM KYILSYRDWE TVNREDEDGT ADITRYFDTS NNEDSSIIYS ELQLNYIGGR VNAVAGFSYS KEDVNQRTEL NLTADTAARM ITSELNEQIG GIMSGQLEAM LGGNTDAHAE AAFGPGTTFA GVVDSIYSSS GFPMDHLWNA NEWANVLNVL EFPGSPYSPE MVEATGDMTY DAVSMAMGIP EIFGPSFAGQ WWQENIYNSG DFTNWGVFAD VDYALTDKWN IIGGLRYSKD QKEFSWYIPK TTFAQVREGV SNILFDEVDM SSSDSWDEIT GRLVTSYQLT DRHMVFASYS TGYKSGGYDS LQPSTESFAP ENTTNYEAGY KGIISDSLIA NISAYYLEVD GLQTTVSSQR PDSTTAVPLI INLDKEITGV ELDLRWMATD NLTLGVVSEV RATDTYNPEF YNSVGELVPA ETRSEDPALN YTLTLDWMPD FGVGTTNLHL DYQFVENTNA DEVGLEDYKK AIPEYFKDMK NLSARLSWTD DSESLEIGLW GRNLLDERYM ESLGGLAVDY LGTPHGRVNR GLETGIDLQY TF
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