Gene Ssed_0839 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSsed_0839 
Symbol 
ID5612990 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sediminis HAW-EB3 
KingdomBacteria 
Replicon accessionNC_009831 
Strand
Start bp999065 
End bp1000048 
Gene Length984 bp 
Protein Length327 aa 
Translation table11 
GC content46% 
IMG OID640931687 
Production transport 2 domain-containing protein 
Protein accessionYP_001472578 
Protein GI157373978 
COG category[S] Function unknown 
COG ID[COG1357] Uncharacterized low-complexity proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones54 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGAAA ATACTCCCAC ATGCTGCTAT CACGAAGATG AAGGCTTTTC CTGCTCAGAA 
CCCGCAGGAA GCTCTGGATT GTGCTATTGG CATGACCCTA AGATCATTAA AAATAAGCCT
GAGGATATCC ATAATTTAGA GCTGTTCGCC CGAAATGGCG GCATGCTCAG GGGCTTGGCA
CTTAAACGTG CCAAACTGCC CGGCATAGAT CTGGTTAGGC ATCATCAAAA AGTAGGTTTC
GATATGACTC ACGCAGAGTT ATATCGTGCC GACCTTCAAG GTGCACATCT ATTCAACCTC
AATCTTCATA AAGCCAGTTT AATGAAGGCG GATCTCAGAG ACTCGAATGT TCACTGCGCA
AACTTAGTAG GGACTAATCT ATTGGGTATC AAGTGGAATG GCGCCAAGAT TGAGAACATC
ACCACCGGGA CAAAATTAAA ACAAGAAACG TTAGCCTTGG AAGCCGTACG TGTGGGTGAA
AAAGAGATAG CCAGAGATTA TTTTGAGCAG GCAGAAGAGA TCTATCGCGA CCTTCGTAAA
GCCGCCGATC GCGAGGGGCT GTTTGCAATG TCGGGTGACT ATATCCGCAA AGAGCTCACC
ATGCGCCGCC ATCAAATGCC CAAATATAGC TTCCACCGAA TTATCTCAAA AATGATCGAT
CTGTTCTGTG GTTATGGTGA AGCACCGTTA CGGGTGATTG GGTTTTCAAT GGGCCTGATT
ATTGTCTGCG CTATTTTCTA TCTTTTTACC GGCTTGAGTT ACGACGGCAA GATACATGTA
TTCCAACTGA GCAATGACTT TGCCAGCAAT TTATACCTGT TTTTCAACTG TATTTACTAC
TCGGTGGTGA CCTTTACGAC TCTGGGATAC GGTGACTTTA CCCCTATCGG ATTCTCCCGA
GCCATTGCAG CGATAGAAGC ATTTACCGGC AGTTTCACCA TCGCCCTGTT CGTGGTGGTA
TTTGTGAAAA AGATGACAAG ATAA
 
Protein sequence
MTENTPTCCY HEDEGFSCSE PAGSSGLCYW HDPKIIKNKP EDIHNLELFA RNGGMLRGLA 
LKRAKLPGID LVRHHQKVGF DMTHAELYRA DLQGAHLFNL NLHKASLMKA DLRDSNVHCA
NLVGTNLLGI KWNGAKIENI TTGTKLKQET LALEAVRVGE KEIARDYFEQ AEEIYRDLRK
AADREGLFAM SGDYIRKELT MRRHQMPKYS FHRIISKMID LFCGYGEAPL RVIGFSMGLI
IVCAIFYLFT GLSYDGKIHV FQLSNDFASN LYLFFNCIYY SVVTFTTLGY GDFTPIGFSR
AIAAIEAFTG SFTIALFVVV FVKKMTR