| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0689 |
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| Symbol | |
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| ID | 5612266 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | - |
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| Start bp | 830658 |
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| End bp | 831827 |
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| Gene Length | 1170 bp |
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| Protein Length | 389 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640931533 |
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| Product | transport protein of the major facilitator |
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| Protein accession | YP_001472428 |
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| Protein GI | 157373828 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 38 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAATTTTA CCAACGTTGA ACAGTCAAAA AATAGCACAT TAGTTCCTGT ATCAGGACTG
TCATTTTTTG CTGTTGCCTC TGGTTTTTTA ATGAGTCTGA TCCCACTCTC ATTACCATCA
TTCGGACTCA GTGAGTCTCT GGTGCCCTGG CTGGCCAGTA TTTTCTATCT GGGCATACTG
ATAGGTGCAA CCAGCATCCA GAATCTGGTT TCGAGAACCG GGCACAGAAT CGCGCTGATC
ATCTTTCTTA GCACACTGAT CCTGACGATT ATCGCCATGT TGCTCGTGCC CGATGCGGGG
GTGTGGTTAA TAGCAAGGTT CGTTGCAGGC TTTGCCGTTG CCGGAATATT CGTGGTGATC
GAATCCTGGT TACTGATGGC CGATAGCAGC AAGCAGAGAG CTAAGCGTTT GGGCTTATAT
ATGACATCAC TCTACGGCGG CAGCGCCTTA GGGCAACTGG CTATAGCTCC TATTGGTATC
AGTGGTATCG CGCCCTATCT CACTGTTATC TTTCTGTTGA TGCTGGCGAT ATTGCCGCCG
CTGTTGATAA AACGTGGTCA GCCAAGCTGT GAGCAGCACC AGAAGGTGAA GCTCTGTGAA
CTGAGAGGAA TGAGCCGTCC CGCTATTCTG GGGTGCTTAG CCTCAGGATT ACTGCTTGGC
CCGATATATG GCCTGATGCC TGTGTATATC AGCAGCCAGG TACAGAGTGC CGATCAGACA
GGTATGCTGA TGGCGGTCAT CATTTTAGGC GGAATGCTGG TTCAGCCTTT AGTCAGTCAT
CTGTCTAGCC GGGTCAGCAA GAGCCTGTTG ATGGCACTGT TCTGCCTATT CGGTACACTA
GGTGTAGTTG GCGTACTGGA AGCGCAGAAT TTTGTGATAA TTGCGACCAG CTATCTTGTT
CTGGGTGCCT GTAGCTTTGC TTTATACCCT ATAGCAATCA CATTGGCCTG TGATGCACTG
CCGGTGGCAA AAATTGTCTC AGCAACGGAG ATCATGCTGC TCAGCTATAG TGTGGGCTCG
GTACTGGGAC CACTGTTCGC GGCGAATCTG TCTGATTCTC CCGATGGCAT CATCTTCTAC
CTGGGAGGCT GCCTCATCAC AACCTGCATC TACATGTTGA TAAAAAGCAT GCAGAAAACG
CACAGTGAAC AGTGGCCACT GTCGCAGTGA
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| Protein sequence | MNFTNVEQSK NSTLVPVSGL SFFAVASGFL MSLIPLSLPS FGLSESLVPW LASIFYLGIL
IGATSIQNLV SRTGHRIALI IFLSTLILTI IAMLLVPDAG VWLIARFVAG FAVAGIFVVI
ESWLLMADSS KQRAKRLGLY MTSLYGGSAL GQLAIAPIGI SGIAPYLTVI FLLMLAILPP
LLIKRGQPSC EQHQKVKLCE LRGMSRPAIL GCLASGLLLG PIYGLMPVYI SSQVQSADQT
GMLMAVIILG GMLVQPLVSH LSSRVSKSLL MALFCLFGTL GVVGVLEAQN FVIIATSYLV
LGACSFALYP IAITLACDAL PVAKIVSATE IMLLSYSVGS VLGPLFAANL SDSPDGIIFY
LGGCLITTCI YMLIKSMQKT HSEQWPLSQ
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