| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0503 |
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| Symbol | |
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| ID | 5613918 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 617625 |
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| End bp | 618908 |
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| Gene Length | 1284 bp |
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| Protein Length | 427 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 640931348 |
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| Product | transcriptional regulator, CadC |
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| Protein accession | YP_001472244 |
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| Protein GI | 157373644 |
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| COG category | [K] Transcription |
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| COG ID | [COG3710] DNA-binding winged-HTH domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCTAAAAA TTACTCCTTA TTTGGAGTTA GATGAAGAGG CTAAGCAATT AGTTGATCAT
GCTAATAATG TGACCGTTAC ATTGACAGTA TCAGAGTCTG CTGTCTTACA TCTGCTATTA
CTCTCTTCTA GCTCTGTCTG TACCAAAGAA GATCTTCTCG CAGCAGGCTG GCCCGATCGC
GTGGTTGCAG CAACATCTTT AACTCAGTGC GTCAGCACCC TAAGAAAGAA GCTTGAACCC
TATCCTGAAG TGATGTTGAG AACGATTGCC GGACGTGGTT ATCAGTTGAA TGTGTCCACA
CGTTCTCATA TTAAGATGCT TGCGGTTAAC GATGCTGAGT CTGTACGTGC GGCTATCGTA
GATGTATCGC TGCTGGTTAA GTTCAGTGGC ATAGTCATAG CGTTAATGAT TGGTTTGTCT
GTTTGGTATT TCAGTGATTA CCATGGGGTC GTACAAGACA CGGCTAGCTG GAATGCGGAT
AAGTCTATCG AACTGAATAT CGGTGGCGTT AAGCAAGATG TTCAGTTGTT GTATAAAGAT
AATGTCGCAC ATCTGCACCC CTCTATGTGG CAGAAGCATT TAGCACCGGA AGTGAACCAC
TTAACTCATT TGAACAAGTT TAATGGTTTC GCGCTGACGG ATGGTAATTA CTACTCTATG
GCCGTGTGCC CCGATGCCGA TGACAAGAGT TGTTCCGGCA AGGGGTTGAT CAACATTACA
GCGATCGACC CGACTCCCGC CGGGTTAAAT ATGAAAAATT TTGCGGCATT AACCAAAAAG
ATGGAGCAAA GGATCCGCTA TAACAGGGTC ATCATTCCTC ATAATGAGCC GGGAACCAGC
GGTTTTGTTG AACATCATTA TCACGCCGAT GTTTACTATC CGGTTCAGGG CAATATGTTG
GTTAGATCCG ATATCAGCCT GTCGCTCATC TATGAGGGAG AAGACTCAGG TAAGTTCTAT
TCCGCTGCTT GTATCACTGA TGAAGAGTGT GCAACTACGC CGATTAAATA CAAGATAAAA
GGTAAGTTTA AGCAGTATGC AGAGCAGATT AACGGCCTGG ATGTCGATGT TTTTCATGTC
AGGGTTGGTC AGAAAGAGCT GATCAAACCA GATAAGGTGA GCTCATCTGC GATGCATTTT
TATCGCGAAA TAAGAAAGCA TGAGATAGTT GAAGAAGACC TCTACTTCTA TCGGGTCTAT
AAAGATACTG ACACGGCGGT GTGGATAGTG CCAATTCTGG GCAATCTTGT TGCCTGGTAT
GAGTATGATA AAGTCAAACT CTAG
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| Protein sequence | MLKITPYLEL DEEAKQLVDH ANNVTVTLTV SESAVLHLLL LSSSSVCTKE DLLAAGWPDR
VVAATSLTQC VSTLRKKLEP YPEVMLRTIA GRGYQLNVST RSHIKMLAVN DAESVRAAIV
DVSLLVKFSG IVIALMIGLS VWYFSDYHGV VQDTASWNAD KSIELNIGGV KQDVQLLYKD
NVAHLHPSMW QKHLAPEVNH LTHLNKFNGF ALTDGNYYSM AVCPDADDKS CSGKGLINIT
AIDPTPAGLN MKNFAALTKK MEQRIRYNRV IIPHNEPGTS GFVEHHYHAD VYYPVQGNML
VRSDISLSLI YEGEDSGKFY SAACITDEEC ATTPIKYKIK GKFKQYAEQI NGLDVDVFHV
RVGQKELIKP DKVSSSAMHF YREIRKHEIV EEDLYFYRVY KDTDTAVWIV PILGNLVAWY
EYDKVKL
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