| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ssed_0140 |
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| Symbol | |
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| ID | 5611679 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sediminis HAW-EB3 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009831 |
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| Strand | + |
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| Start bp | 158116 |
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| End bp | 158796 |
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| Gene Length | 681 bp |
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| Protein Length | 226 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640930966 |
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| Product | ThiJ/PfpI domain-containing protein |
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| Protein accession | YP_001471881 |
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| Protein GI | 157373281 |
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| COG category | [K] Transcription |
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| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 62 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACGTC GTGATTTTTT AGCTGCAGGC ACTCTGGCCA TGGCTACCGC TATGGTATCT
CCGCAACTTT TTGCTGCAAC TGAAGATAAA CCTTTGCAGA TTCTAGCCTT AGTATTCGAT
GACTATGAAA CTCTGGATCT ACATGGCCCG GTAGAGATGT TAGGGCATAT GAAAAATGTC
CAGATTAAGC TTGTTGGGGA TAAGAGTATT ATCAGAAGTT ATCAAGGGCC AAAAGTGGTG
ACCGATATCT CGATGGATAG CGTGACTCCT TGTGATCTTT TCATCGTTCC CGGAGGCTTA
GGTACCCGTA AGCTCGTCGA AGATGAAGAG CTGATGGCTT GGCTCAGAAA ACAGGTCAGT
GTATCGGGTA AGGTGTTCTC TATCTGTACG GGGTCCGCAC TGTTGGCTAA AGCGGGTATC
TTAGATGGTG TTAATGCCAC AACAAATAAG ATGGCCTATC AGTGGGTGAC GGGATTGGCC
GGGCAAGTTA ATTGGCAACC GAGCGCTCGT TGGGTTGACG ATGGTAAGTT CCTGACATCA
TCCGGTGTAT CGGCAGGGAC TGATGCTGCA CTCTTTTATG TCAGCCAGCT AAGGGGGGAA
GTTGAAGCGA GAAGAATCGA GAGGCTTACC GAGTATCATT GGAATCATGA TGCGAAAAAT
GACCCCTACG CCGTCTCTTA G
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| Protein sequence | MKRRDFLAAG TLAMATAMVS PQLFAATEDK PLQILALVFD DYETLDLHGP VEMLGHMKNV
QIKLVGDKSI IRSYQGPKVV TDISMDSVTP CDLFIVPGGL GTRKLVEDEE LMAWLRKQVS
VSGKVFSICT GSALLAKAGI LDGVNATTNK MAYQWVTGLA GQVNWQPSAR WVDDGKFLTS
SGVSAGTDAA LFYVSQLRGE VEARRIERLT EYHWNHDAKN DPYAVS
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