| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_1292 |
|---|
| Symbol | |
|---|
| ID | 5081019 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | - |
|---|
| Start bp | 1454460 |
|---|
| End bp | 1456631 |
|---|
| Gene Length | 2172 bp |
|---|
| Protein Length | 723 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 640498424 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_001182819 |
|---|
| Protein GI | 146292395 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01145] ATP synthase, F1 delta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAAAA TTATTGTTAT TTTATTGACG CTGTTAATGT CGGTTTCCTG GAGTGTTCAG
AGTCGTGATC TTGAATCTGA AGAAGTTGAA CTGCGTGAAA CACCGCAAAA CATGTACGAC
ACCCTACATA AATCGCTCTC TTTCCCTATT GTCTTTAAAA ATCGTGAACA ATTCGAGCGT
GTAGCCCAAG AGCAAGGTTA TAAGCCAGCA GAATTTATGC ATCTTTTGCA ATTACTGGCA
CGACTTAATA TGGAACCCAA TGTTAAATCT AAAGTTGGAG TTCAAGATGC AAATGCCATC
ATAGCGCTAC TCGCAAGTAT TGCCGAATCG CCCTATGAAC AAGCCTTTGT TGCTATGTTG
AAGGGGAGGT ATATTGGTCG AACAGAACAA AAGTATCAAG AAGCAATAAC CCTCTATAAC
GAGGCGCTCA GCCGTATCAA TGACAGCTTT GATATTGAAG CCATGCTGCT TAAGCACACC
ATTCACGAGC ATTTAGGTGG TTTACATTTA GTCATACGCC AAGATGTTCC CGCCTTAATG
CACTTTCATA CCTATCGTGA TATCGCCTAT AAGCTACGAA ATGATTATCT GATTGCTGCT
GCGGAATCAA AACTTGGCCA TTATTACAAT AAAAATCAGC AACTAACTAA ATCATTACAA
CATTACAGTG AAGCCATTCG GCTCTCTAAC CGCTCTAACT ATCCCTCAAT GAAAACCCAC
CTACAGCTGC AGTTAGCCAA GGTTTATCGT GATTTAAAGC AATGGGATGA AGCGCTGAAG
AATGCCCATG AAGCCGCTGA CGGTTTTAAA AAAATGGGCA ATGATACTTA TCTATCGAGT
TGTATGACTG TCATCGCCAT GGTGTACGGT GAACAAGGAG ACTGGAATAA GGCTATTGAT
TACTACCTTA ATGCCCAGCA ATTAGATGCT AAACGCGGTA ACTATATTGC CCAAGGTCTG
AACTACCATA ACCTTGGGCA AGCCTACTCA AATATCAGTG ACAACACGAA TGCCTTAAAA
TATTTATTAA TGGCAAATCA AATCTTTCAA GAAAAGCAAA GTCATCATTA TTTAGTGTAT
AACGAATTAT TGATTGGTGA AGTAGCCAAA ACCAATCAAG ATTGGCCATT GATGATGAGT
CATGCCGATA ATGCATTGGT GCTTGCAACC GAACTAAAAC TGATGGACGA GCAAAAATCC
GCATTAACAC TCATCGCCCT CGCGGCAGAA AATTTAGGAG AACAGGGTAA AACCATAGAG
ACACAAAAGC AGATCATTGA ATTAAGTTCA CAAGAGCAAA ATACAGATAA AGCCCCATCT
GTATCACCAT CAACGCTCGC AGAGCAGCAA CTCAAGCTTG AACTTAGCCT GTTACAAAAT
AAATTTAATG AAGCTCAGCA AGAAACCAAA AACACCTATA AGCTATTGGT ATTATGTGGT
TTTATTCTGG CATTATTTAT TATCATTATG TTGATACAAC TTAAATCTCG CCGCCAAATC
AAAATCGAAA ATAAAGCGTT AGCACAACTC AGTCAGCAGG AAGCTTTTAC CCATCACCTA
GGATATGCTG CTTTACTTGC ACATTTAAGC CCTGGACATT TAAACCAAAA ACAACCATCA
ACAGCCGCAC TAGGCTTAAT TGAATTTCCA GAGCACGTCA CGACGGATCT TCACTATGGC
CAATACTTTG CCAATACCAT AAACACTAAA TTGGCTGCCC TAATATCTGA TGCACTATCC
CTACCCGTCT ATGTTATACG TCAAGGGGTA TTTGCCGTTC GATTCAACCA TGGGATAGAA
CCAGAGCAAA TTATCAGCCA AATTCGACAG TACCTCGATA GACAAGCATT GACCCAGACG
TTTAAGCTCG GATTTATTAA CTTACCTCTG CTGGTTAAAT CAGAAATGAA AATGGCGCCT
CAACTTCAAT TTGAGACAGC GCAAATGGCC CTCGCCTGCG CGCGTAGCAT ACCGACTCAA
GGCGATCATT ATGTCAGTCT TAGAGCACTC GATTTTGTAC CGCCAACGCT CTTTGCAAAT
CCGCTCTTTT TACATCTCGA GAAGGGCATT GAACGCGGAT TGATCCGCGT GGAAACCAAC
GCAAATAAAG ACGATATCCA TTGGCCTTGC TGGGAAAATA ACCAATATAG ACAATTACTG
GAAAATATTT GA
|
|---|
| Protein sequence | MQKIIVILLT LLMSVSWSVQ SRDLESEEVE LRETPQNMYD TLHKSLSFPI VFKNREQFER
VAQEQGYKPA EFMHLLQLLA RLNMEPNVKS KVGVQDANAI IALLASIAES PYEQAFVAML
KGRYIGRTEQ KYQEAITLYN EALSRINDSF DIEAMLLKHT IHEHLGGLHL VIRQDVPALM
HFHTYRDIAY KLRNDYLIAA AESKLGHYYN KNQQLTKSLQ HYSEAIRLSN RSNYPSMKTH
LQLQLAKVYR DLKQWDEALK NAHEAADGFK KMGNDTYLSS CMTVIAMVYG EQGDWNKAID
YYLNAQQLDA KRGNYIAQGL NYHNLGQAYS NISDNTNALK YLLMANQIFQ EKQSHHYLVY
NELLIGEVAK TNQDWPLMMS HADNALVLAT ELKLMDEQKS ALTLIALAAE NLGEQGKTIE
TQKQIIELSS QEQNTDKAPS VSPSTLAEQQ LKLELSLLQN KFNEAQQETK NTYKLLVLCG
FILALFIIIM LIQLKSRRQI KIENKALAQL SQQEAFTHHL GYAALLAHLS PGHLNQKQPS
TAALGLIEFP EHVTTDLHYG QYFANTINTK LAALISDALS LPVYVIRQGV FAVRFNHGIE
PEQIISQIRQ YLDRQALTQT FKLGFINLPL LVKSEMKMAP QLQFETAQMA LACARSIPTQ
GDHYVSLRAL DFVPPTLFAN PLFLHLEKGI ERGLIRVETN ANKDDIHWPC WENNQYRQLL
ENI
|
|---|
| |