| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sputcn32_0538 |
|---|
| Symbol | |
|---|
| ID | 5078064 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella putrefaciens CN-32 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009438 |
|---|
| Strand | - |
|---|
| Start bp | 585195 |
|---|
| End bp | 586733 |
|---|
| Gene Length | 1539 bp |
|---|
| Protein Length | 512 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 640497665 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001182069 |
|---|
| Protein GI | 146291645 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0790] FOG: TPR repeat, SEL1 subfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTGTTGA TACTCATAAT TATTGCGTTT GTTGTATTGT TTATTGTTTT TGCTAAATAT
CAAAAAAAGC AAGCGCAAGC TAAGGCGCTT GCCGCAGGTG AACCTACGGC GCTACTCAAT
CATGGCCTAA CGCTGATTAA CCAAGGCGAA GTCAACGCTG GTCTAGATTA TATTCAGCAG
GCAGCCGATA AAGGCTTAGC CGTTGCCGCC ATTGCTATGG CCGAACTTTA TTCGGGTCGA
TTCCCACAAA TCCCCGCCGA TCCCAAGGCA TCTAACGATT GGTATAAAAA AGCCGCCGAA
ATAGAGCCTC AATATTTACC CATGCTCACA CTACCTAATT TGCTCTCTTC GCAGTCGCAA
ACACTCGATG AGTTAATCGC ACAGGTAGAA CAGCTCAAAC CTAATGCCGA AGCGGGGCAA
GCCGAGTTTC AATATGAGCT TGCTTACTTG TATCTAAGCC AGCCCTTTCT CGATCCCGAT
GCTAGCCAAG CAATTTACTG GTTCGAAAAA GCCGCCGCAC AAGAAAACCA AAGAGCCTAT
TACCATTTAG CCACACTCTA CTGGCATGAT GAGCGCGTCA CTTCGGACTA TATCAAAGCA
CGTGAATACT TTGAGAAATC CGCAGCCGCT GATTATGAAT TAGCAAAAGA TGATCTAGGG
CATATGCTTG CTGCAGGCCA AGGTGGACCT AAAGATTTAG CGCGTGCAGA GGCATTACTT
AGCGAGCGCG CCGCAGACGA TGATTTCCGC CAGTATTATC TTGGTAAACG TTTCCTCTAC
GGTGAAGATT TTGCTGTCGA CTATGACAAG GCGCGCCATT GGTTAAGCCA ATCTGTCGCT
AGAGGTAATG ACTTCGCTAA GATTGAATTT GCTCATCTTT TACTGAAAGC GCCACAAAAT
GAAAGTGATT ACCAACAGGC TAAAATTGAC TTTGAAGAAT TCGCACTTAA GTGGAATGAA
GACGCACTGC TAGGCCTGGG CAAGATTTAT GAGCAAGGTT TAGGCGTGAG TCGCCAACCG
ATTAAAGCGT TAATGTATTA CCAGCTCGCG GCCATGAGCA ATAGAGCAGA TCACCTAAAA
GAATTAGCCA GATTCAGTCA GCAACTAGGC ACCTTAGAGA TAAGAGAGGC TGAGCGTCTA
TGTGACAGTT TCTTGCATCA GCATCCAATC CCCGCTGAGC AACAACAATA TTTTTATTCC
TATAAGGCTG AATCATTTTT AAGTGGTGAA AAACCCACTC AAGAGGCTCT ACAAGCGGCA
GAAGCTTGGT ACATCAAATC GGCAGAGCTA GGTAATGAAA TTGCTATGCG GGAACTGGTC
AATATTTACG GCGCGGAACA ATTAAATAAA CCCATACAAA TGTTTATTTG GTCTAGTTTA
TTGCTACGTC ATTTTGGTAA ATACGGGATG AATAGCGTTC AACGGCTGCA TCAAAACACC
GCAAAATCAT GTTTAACAGA ATCCGAACTT GCCTACGCTG AAACTCAAAT TGAGACCATA
GAAAGCAAAC TTGCCCCCTT TATTGAATCC GAAGATTAA
|
|---|
| Protein sequence | MLLILIIIAF VVLFIVFAKY QKKQAQAKAL AAGEPTALLN HGLTLINQGE VNAGLDYIQQ
AADKGLAVAA IAMAELYSGR FPQIPADPKA SNDWYKKAAE IEPQYLPMLT LPNLLSSQSQ
TLDELIAQVE QLKPNAEAGQ AEFQYELAYL YLSQPFLDPD ASQAIYWFEK AAAQENQRAY
YHLATLYWHD ERVTSDYIKA REYFEKSAAA DYELAKDDLG HMLAAGQGGP KDLARAEALL
SERAADDDFR QYYLGKRFLY GEDFAVDYDK ARHWLSQSVA RGNDFAKIEF AHLLLKAPQN
ESDYQQAKID FEEFALKWNE DALLGLGKIY EQGLGVSRQP IKALMYYQLA AMSNRADHLK
ELARFSQQLG TLEIREAERL CDSFLHQHPI PAEQQQYFYS YKAESFLSGE KPTQEALQAA
EAWYIKSAEL GNEIAMRELV NIYGAEQLNK PIQMFIWSSL LLRHFGKYGM NSVQRLHQNT
AKSCLTESEL AYAETQIETI ESKLAPFIES ED
|
|---|
| |