| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Spea_1941 |
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| Symbol | |
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| ID | 5662335 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella pealeana ATCC 700345 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009901 |
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| Strand | + |
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| Start bp | 2355585 |
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| End bp | 2357888 |
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| Gene Length | 2304 bp |
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| Protein Length | 767 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 641236530 |
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| Product | Patched family protein |
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| Protein accession | YP_001501798 |
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| Protein GI | 157961764 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1033] Predicted exporters of the RND superfamily |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.314196 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTAGATA AATTAGTTAA TGGATTCGAA TCTTATCTAT TCCGTCATAG AGCTTTCGTT
ATATTACTGT TTGCGGTAAC GACTATCTTC CTTGGAATTC AAGCGAGTAA CCTGAAAATG
GATGCCGCAT TTGTTAAAAA CATTCCACTT AACCACAACT ACATGCAAAC CTATCTGAAG
CACCAGAAAC AGTTTGGTGG TGCCAACAGC ATCATGGTGG CAGTAGAAGA TACGAGCGGG
AACATTTTCA ATCCAAATTT CTTTGATGCA CTTAAAAATG TACATGATCA GCTATTTTTT
ATACCTGGTG TAGACAGAGC ACAAGTTAAA TCACTGTTCT CGCCATCTAC GCGCTTTACT
GAAGTCGTTG AAGACGGCTT TGCTGGTGGT CCTGTCATTC CCGCGGATTT TTCTACCACA
GAGCAAGGCT TAAAAACTGT TCGAGGTAAT ATCGAAAAAG CAGGTATTGT CGGCCGTTTG
ATTGCTGAAG ACTACTCGGC AGCCATGGTG AGTACGCAGT TAATGGATTT CGATCCGCAA
ACTGGCGAAC CCTTAGATAC TTTGGCGTTT GCAGCACAGT TAGAAGAGCA GTTACGTGAA
CAGTATGAAA CCGATGAAAT AAAAATTCAT ATCATTGGTT TTGCTAAGAT GGCCGGAGAT
GTTGCCGACG GTGCAAAAGG AGTGCTGCTG TTTTTCCTTA TTGCTATCTT AGTGACTGCA
GTGATGGTTT ACTTTTTCTC TAAGTCGGTA GCGCTAACAA TTTTGCCGTT AGTATGTAGT
TTGATTGCAG TTGTTTGGCA ATTAGGGTTA TTAACCGTCA TCGGATTTGG TTTAGACCCT
ATGTCTATTC TTATTCCATT TTTGGTGTTT GCCATTGGTG TAAGTCACAG CGTACAGATG
ATTAATGCGG TAAGACGACG CGTTACCGAT GGACAAACGA CAAAGGCAGC CGCGGCACTG
GCATTTAGAA GTCTGCTTAT TCCAGGTGGT GTTGCGCTGT TGTCTGACAC CATAGGTTTT
ATGACGCTAT TAGCCATCGA CATTGGTATC ATTCGAGAGC TCGCGATTTC AGCTTCTTTA
GGTGTTGCTG TGATAATTTT AACAAACCTA ATCTTATTGC CGCTGGTGAT CTCTTTTACA
ACAGTGACGC CTCGTAAAGA TAATAAGCCA AACCCTGTAA ATAACATCTG GCTTAAGCTA
TCTAATTTCG CTACGCCAAA ATACGCGATT TGGGTCTTGA TTGTGACAGG ATTGCTCTAT
GCGGTTGGCT TACAGCAAGC GAATAAGATG AAAATTGGCG ATCTACAAGG CGGAGCTCCC
GCGCTGCATT TAGACTCTCG TTATAATCAA GACACTTTCT TTATTACTGA TAAGTTCTCT
ATTACAACAG ATGTGATGAC AGTGATTGTT GAGGCATTCC CTGAAGCCTG TACGTATCAT
TCTGTATTGA CTCAAATTGA TGAGTTTGAG TGGCAGGTTA GTAACACACC TGGAGTCGAG
GCTACGGCGA GTTTGGCATC GGTGGCAAAG CGTGTAAATT CTGGCTTTAA TGAAGGCAAT
CCAAAGTGGA GTGTTTTGCC ACGCACCACA GCAAGCTTGG TTCAGGCGGT TGGTCGCGTA
CCGACAACTT CAGGGTTACT CAATAGCGAT TGCTCTGTGA TGCCGGTTTA TCTGTTCCTA
AAAGATCATA AAGCTGAAAC CATTGAATTG GTTATCGATA AGGTTAATAA GTTACAAAAA
GAGCTCGATA ACGACAAAAT CCAGTTTAAG TTAGCATCGG GCCCTGTCGG CGTCATGGCG
GCAACCAATG AAGCAGTTGC AGAAGCACAG CTACCTATGA TGCTTTATGT CTACGGCGCG
GTGTTTATTC TATGTCTTAT CAGTTTCCGG TCACTAAGAG CGACGATAGC AGTGATTTTG
CCTCTGTATG TGGTGTCCAC ATTGGCGCAG GCGTTAATGA CTCAGCTCGA TATTGGACTG
GCCGTGAGTA CCTTACCCGT GATTGCGCTA GGTGTGGGTA TTGGTGTTGA TTACGGTATT
TATATCTTAT CGACCATGGC TGTACGTCTA AGAGATGGGA TGCCGGTACA AAAAGCTTAT
TATGAGGCAC TAGTCGAACG TGGAAGTGCG GTGATTTTCA CTGGACTGAC ATTAGCGATT
GGTGTGAGTA CTTGGTTCTT CTCGGCTCTT AAGTTCCAAA TGGATATGGG GATTTTGCTT
ACATTCATGT TTTTGGTAAA TATGTTGGGG GCAATAATTA TCCTACCAGC CATAGCTGCC
ATGTTTTGGC GGCAGCCCAA GTAG
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| Protein sequence | MLDKLVNGFE SYLFRHRAFV ILLFAVTTIF LGIQASNLKM DAAFVKNIPL NHNYMQTYLK
HQKQFGGANS IMVAVEDTSG NIFNPNFFDA LKNVHDQLFF IPGVDRAQVK SLFSPSTRFT
EVVEDGFAGG PVIPADFSTT EQGLKTVRGN IEKAGIVGRL IAEDYSAAMV STQLMDFDPQ
TGEPLDTLAF AAQLEEQLRE QYETDEIKIH IIGFAKMAGD VADGAKGVLL FFLIAILVTA
VMVYFFSKSV ALTILPLVCS LIAVVWQLGL LTVIGFGLDP MSILIPFLVF AIGVSHSVQM
INAVRRRVTD GQTTKAAAAL AFRSLLIPGG VALLSDTIGF MTLLAIDIGI IRELAISASL
GVAVIILTNL ILLPLVISFT TVTPRKDNKP NPVNNIWLKL SNFATPKYAI WVLIVTGLLY
AVGLQQANKM KIGDLQGGAP ALHLDSRYNQ DTFFITDKFS ITTDVMTVIV EAFPEACTYH
SVLTQIDEFE WQVSNTPGVE ATASLASVAK RVNSGFNEGN PKWSVLPRTT ASLVQAVGRV
PTTSGLLNSD CSVMPVYLFL KDHKAETIEL VIDKVNKLQK ELDNDKIQFK LASGPVGVMA
ATNEAVAEAQ LPMMLYVYGA VFILCLISFR SLRATIAVIL PLYVVSTLAQ ALMTQLDIGL
AVSTLPVIAL GVGIGVDYGI YILSTMAVRL RDGMPVQKAY YEALVERGSA VIFTGLTLAI
GVSTWFFSAL KFQMDMGILL TFMFLVNMLG AIIILPAIAA MFWRQPK
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