Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Snas_4166 |
Symbol | |
ID | 8885367 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Stackebrandtia nassauensis DSM 44728 |
Kingdom | Bacteria |
Replicon accession | NC_013947 |
Strand | - |
Start bp | 4459760 |
End bp | 4462909 |
Gene Length | 3150 bp |
Protein Length | 1049 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | |
Product | transcriptional regulator, winged helix family |
Protein accession | YP_003512910 |
Protein GI | 291301632 |
COG category | |
COG ID | |
TIGRFAM ID | |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.497343 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCGGATCG ACCTGTTGGG CCCGTTGCGA ATCCTCACCG GTGACCGGGA ACTGCCGATC TCGGGCGCCC GGCTGCGGGG CCTGCTGACG CTGCTGGCGC TGCACGCCGG GAGACCGGTG ACGGCCGAAC GGATCGCGGA CGCGCTGTGG ACCGGCGAGG CGCCCAGCGC CAACACCGTC CAGTCGCTGG TGTCGCGGCT GCGTGGCGTG CTCGGCGACC GCGAACTCAT CGAATCCGGG CCCGGCGGCT ACCGGCTGGC GATCGATCAA TCGCATGTGG ACATCCACGC CTTCGAGGAG CTCGCGGCCA CCGGCCGGGG CGCCTTGTCC GGCAAGGACT TCGCGACGGC GGCTCCCGCG CTGCGACAGG CACTGGCGTT GTGGCGTGGC GAACTGGGCG AACTGTCCGC CGTCGACGAC CGGGCCGCGG TGCGGGCGCT GACCCTGCGC GAGGAGGCCC GCGACGACCT CGCCGACGCC GAACTCGCGC TGGGAAACGC CGCCACGATC CTGGCCGAAC TGCGCGAACG CGCCGCCGCG CAGCCGTTCC GGGAACGCGT GCAGGCACAG TTGCTGCGGG CGCTGGCCGC CACCGGCGCG TACGCCGAAG CCCTGTCCCG CTTCGAGACC GTCCGGGAAC GGCTCGCCGA CGAACTCGGC GTCGACCCCG GCCCGGCGCT GACCGAGGCG CACCTGGCGG TGCTGCGCGC CGAGAGCCAA CCGGCCAAAC CCGGCAACAA CCTCCCGGCG CCGCTGACCA GCTTCATCGG CCGCGACGCC GACGTGGTGG CGCTGGAGGA CGCGCTGTCG ACCGACCGCC TGGTCATGGT GACCGGTCCC GGCGGTTGCG GCAAGACCCG GCTGGCCGTC CACGTCGCGC ACCGGCTCGC CGACACCATG GACGTCCGGA TGGCGGAACT GGCGCCGGTC ACCGAGGGCA GCGAGGTGCC GCACACGGTC GTGACCGCGA TGGGCCTGCA CGAGGCCGCG GCCGGTTTCG GCGCCACCGT CACCGGCTTC ACCGACCCGA TCGACCGGAT CGCCGCGGCC ATCCGCGACC AGCCCTGGCT GCTGGTCATC GACAACTGCG AACACCTGCT GGACGCGGTG GCCGGGCTGG CGTCGCGGCT GTTGACCCGC TGCCCCCGGT TGCGGATCCT CGCCACCAGC CGGGAACCGC TGCGCATGAC CGGCGAGGTC ATCCGCCCGG TCCGGGCACT GCCCTACCCC TACGAGGACG TCAGTCTCGC CGAGGCCGCG AAGTACCCGG CGGTGCGGCT GCTGGCCGAA CGCGGCCACG CCGCCAACGC CGCGTTCACA CTGGACACCG GCAACCTGAC CGACGTCGTG GAGATCTGCC GCCGCCTCGA CGGCCTGCCG TTGGCCATCG AACTGGCCGC GGCCCGACTG CGGGCCCTGA CCCCGCACCA GTTGGCGGTG CGGCTGGGGG AGCGGTTCCG GCTGTTGACC GGCGGCGACC GCACCGCGCT GCCCCGGCAG CGGACCCTGC GCGCGGTCGT CGACTGGAGC TGGGACATCC TCGACAAACC CGAGCGGCTG CTGCTGGCCC GCATGTCGGT GTTCGTCGGC ACCATGACCC TGGAGTCCGT CGAGGCGGTG TGCGGCGACG AACTCGACGA GACCGCCTAC ACGCTGGCCT CGCTCGTCGA CAAGTCGCTG GTCTCGCTCG TCGGCGAGCG CTACCGGATC CTGGAGACCA TCCGCGAGTA CGGCTCCGAG AAACTCGCCG CGATGGGGGA GTCGACGGCG CTGCGCCGTC GGCACGCCGA ACACTTCACC GTCCTGGCCG AACAGGCCGA CGCGAACCTG CGCGGCCACG ACCAGGTCCG CTGGCTGGCC CGGTTGACCA CCGACCACGA CAACATCATC GCCGCGGCCC GGCGCGACAT CGGCGACGGG AACGTCGACC GGCCCGCCCG GGTGGTGTCG GCGATGCTGT GGTTCTGGTG GCTGCGCGGC CAGCACGCCG AGGCCATCGA CCTGGCCGAA CAGGTGCTGG CGATGCCGGG CGAACCGGAG CCGAGGCAGG CCGCCCTGGT CCGGGTCGCG TCCACCTTCG GGCTGTTCGA CATGGACATC TCGCTGGCCG AGGCCCGCGG CCGGGTCCTG GAGGCCCTGG CGATCCGCGA CGCCAACGGC GTCACCGACC CGCACCCGTT CCTGCGGATG CTGGAGCTGA TGGCCGAGAC GATGGGCGGC AGCCCGCTCC GCATGATCCG GCTGGTGCAC CGACTGAACG AAGACCCGGA CCCCTGGATC CGCGCCAGCG CGATCAGCTT CCGCGCCAAC GTCCTGCTCA ACTCCGGCCG CGTCGCGCGC GCCGAACGGC TGTTCCGTCG CGCCGTCGAG CTGTACCGGC GGGTGGGGGA CCGCTGGGGC CTGGCGGTGG CCGCTTCCGC GCACGTCGAG GTCGCGGCGC TGCGCGAGGA CCCGACCGAG GCGCGCGAGC TCATCGAACT GGCGGTGCGC ACCGAATCCG AGTTCGGCAT CCACCCCGGC AAGTCCCACA TCAGCACCCG GCTCGAGTAC TTCGTGCTGC GCGACACCGA CCCGTGGGAG AAACTGCGGG AACTGGAAGC CGAGATCGAA GCCTGCCACC GGATCGGCAA CTTCGAGATG ACCGGGTACA TGCACCTGCT CGCGGCACAG TACCTGCGTC TGACCGGCGA CCCCGACGCC GCGCTGGCCC ACCTGAACAC CAGTAGGACC ATCCTGGCCC CGCATCTGGC GGCGATGAAG GACCGGGGCG GCGGGCCACC GGACCTGCCG TCGCTGCTGC GCATCGTCGA AGCCCGGTTC AGCCTGGACC ACGACCGGCT CGACGAGACC GAGACCCTGC TGGCCGAAAC ACTGTCGATG GCCCTGCGTG TCGGCGAGGC GCAACTGATC GGCCGGATCC TGGAGACCGA GGCCGAACTG CTGCTGCGAC GCGGCGACCA CGACACCGCC GCACGGCGAC TGGGTCAGGC CGAGCTGGCC CGCGGCACCA GGAACGCCTC GTCCCCGGAC GTCGCCCGCA CCGAATCCCG GCTGCGGGAA GTACTGGGCG ACAACAGGTT CCGCGAGCTC TACGACCGGA GCCGCACGGG TTCGCGCACC GGGTTGTTCG CGGAACTGCG GGAATCCTGA
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Protein sequence | MRIDLLGPLR ILTGDRELPI SGARLRGLLT LLALHAGRPV TAERIADALW TGEAPSANTV QSLVSRLRGV LGDRELIESG PGGYRLAIDQ SHVDIHAFEE LAATGRGALS GKDFATAAPA LRQALALWRG ELGELSAVDD RAAVRALTLR EEARDDLADA ELALGNAATI LAELRERAAA QPFRERVQAQ LLRALAATGA YAEALSRFET VRERLADELG VDPGPALTEA HLAVLRAESQ PAKPGNNLPA PLTSFIGRDA DVVALEDALS TDRLVMVTGP GGCGKTRLAV HVAHRLADTM DVRMAELAPV TEGSEVPHTV VTAMGLHEAA AGFGATVTGF TDPIDRIAAA IRDQPWLLVI DNCEHLLDAV AGLASRLLTR CPRLRILATS REPLRMTGEV IRPVRALPYP YEDVSLAEAA KYPAVRLLAE RGHAANAAFT LDTGNLTDVV EICRRLDGLP LAIELAAARL RALTPHQLAV RLGERFRLLT GGDRTALPRQ RTLRAVVDWS WDILDKPERL LLARMSVFVG TMTLESVEAV CGDELDETAY TLASLVDKSL VSLVGERYRI LETIREYGSE KLAAMGESTA LRRRHAEHFT VLAEQADANL RGHDQVRWLA RLTTDHDNII AAARRDIGDG NVDRPARVVS AMLWFWWLRG QHAEAIDLAE QVLAMPGEPE PRQAALVRVA STFGLFDMDI SLAEARGRVL EALAIRDANG VTDPHPFLRM LELMAETMGG SPLRMIRLVH RLNEDPDPWI RASAISFRAN VLLNSGRVAR AERLFRRAVE LYRRVGDRWG LAVAASAHVE VAALREDPTE ARELIELAVR TESEFGIHPG KSHISTRLEY FVLRDTDPWE KLRELEAEIE ACHRIGNFEM TGYMHLLAAQ YLRLTGDPDA ALAHLNTSRT ILAPHLAAMK DRGGGPPDLP SLLRIVEARF SLDHDRLDET ETLLAETLSM ALRVGEAQLI GRILETEAEL LLRRGDHDTA ARRLGQAELA RGTRNASSPD VARTESRLRE VLGDNRFREL YDRSRTGSRT GLFAELRES
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