Gene Smed_5906 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSmed_5906 
Symbol 
ID5320208 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSinorhizobium medicae WSM419 
KingdomBacteria 
Replicon accessionNC_009621 
Strand
Start bp871648 
End bp872130 
Gene Length483 bp 
Protein Length160 aa 
Translation table11 
GC content65% 
IMG OID640777601 
Productputative tricarboxylic transport membrane protein 
Protein accessionYP_001314533 
Protein GI150377938 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.896471 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.308497 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGCGC TCGCGGCACG CCCACAGCTC GTCATCGTCT CCCTGATCGT GCTGGCGGTC 
GGGGCGGCGG TCATGTGGAC TGCGACGACG ATACCGGTCG GACCCGGCGT CGCCGCCGTG
GGCCCGCGGT CGTTTCCCTT CGGCGTCGGG CTGCTTCTCA TTGCCTGCGG CCTGCTGCTT
CTGCTGGAGG CGAGCCGCGC GCCCTGGGAC TGCGAAGCGA CCGATCCCGC AGCACCCGGT
CTCGATCTCG TACCGCTCGG CATTCTGGCC TGCGGCATGA TCGTGAACGT CCTGCTCATC
AAGAGCGCGG GTTTCATTCT CGCATCGACG CTGATGTTCG CCTTCACGGC AAGGGCCTTC
GGTGCGCGCC GCCTCTGGCT GTCGGTGCTG ATCGGTTTCG CACTCGCCCT TGCCACCTAT
TACGGCTTTG CCCGCATGCT TGATCTGAGG ATTGGCGGCG GCTTCATCGA GGACTTGTTC
TGA
 
Protein sequence
MKALAARPQL VIVSLIVLAV GAAVMWTATT IPVGPGVAAV GPRSFPFGVG LLLIACGLLL 
LLEASRAPWD CEATDPAAPG LDLVPLGILA CGMIVNVLLI KSAGFILAST LMFAFTARAF
GARRLWLSVL IGFALALATY YGFARMLDLR IGGGFIEDLF